RNA id: TU412228


Basic Information

Item Value
RNA id TU412228
length 2224
lncRNA type read_through
GC content 0.41
exon number 6
gene id G347896
representative False

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 919384 ~ 1701550 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGAGGATCAGGTGGAGGATCAGGTGAAGGATCAGGTGAAGGATCAGCTGGAGGATCAGGTGCTATCGTCGTTGCTGTAGTCGCGGCTCTCGTTGCTCTCGTTGCCGTTGTTGCTGGAATTGTTGtctggaagaagaagaactctgGcttcaaacctgttccagccaAACCCTCCTTTGAAGGAGATTCTTCCTCCAACAACTCTTAaagtgtgactgtgtgtcttcctgctgaactgagagagagagaggaggagaggaagatgaggaacacacactcacacacacacacacacactcacacacacacataatcttGGTGTATgattttcttggtgtttggatCGAGGAGCTTTTTATTGTGAGTctgttgttattgctgtaaaATGGGATTATTAGGGATTGTTAGGGTTTTAATTTTTTGCTCTGTGTAAATTCTCGTAGTTTTCTGTGTGATTgggtttgatgtgtgtgtgtgtttgtcgcTGTGCTGTTCTGTGCCACTGAGCTCAGCGCTGTAGGATCCTGCTTTTGGGGGAAACCAGGTTTTGGAGTAAAGATGGTCAGTGATGGCGTCATAGCAAGTCACTTTCCATTCTTCCTCTGGGATCTCCGTCGCTCACagcaatgaaacacacacaagcagattTAAACCTGTTCTGTGCAACACGTCTGGATGATGAACGCAGCTTTACACTCGCCTTATTTTACATTCAGTACAACcttcctgatacacacacacacacacacacacacacacacagtgattctGAGCTTCTTTACTCATGATTTACAACATGATTTACTGTAGAATTGAATTCAGATCATAACGTTAGTACATGAGAGGTTTGATTTACATCTTTTAGCTTTTAATCCAGTGAGATTTTCCTCAGTAGCTGTTTGTGGAGCTGATTTGTGCTTCGTATCAGACAGAAACTGGGGCTTCAGATGTGATTGGTGTTGAACAGATTGGACTAAAGTGGAAAAGAACAGGAGTGAACACAGCAGAAGCAGGAGCTCATGCTGGATGATCAGCactcagagaaaacacaaatcaaCTAAATGACACGGCACTGAttccattatttaattatttaactcgatttaaagcaaataacaaTCCATTAAACACGTTTTCACATCTGTATGACCCAAATCTCCCACAATGCATCTGTTCTGTCAGTGTAACAatctgaatgaataataaagtgtattttcttcattctgtgctctgagttttattttataactgtgTTCTTTTAAAGCACATGATCTCAGGATCACTTGTACACTTACTGTCAtgtgcttcacacacacacacacacacacacacacacacatctctcttgAGTTTAACATGACAATGAGAGGTAGATTTCATCTCAGAACAGTCTTGAGAGACATTTTCCAATTTaagcagtttattattttaatcttaattCAAAGCACATTTGAGTTTTCTGCTTTCAGCACTGACCAAAAATGTTCACAATCTGGAGTTTTAGAATGTCTAGAATTTACAGTttcaaatgtgtaaaatatggaAACATGAGCCAGATGAATTTTGCCCCTCAGGCTGATCTTTAAGgcactgtatgtttttattagtCTCAGGACAATCAGTAATTATACCACATcatacactgtgtgtttccaGATCTTTcaccacaccaacacacactcaacactgacATGTCAGAGTTATTAGCTATAATAGCTATTAGCTATTAGCAactgtcttcacttcctgcttgttcATGGGATGTCTTGCCTTCAGGTTTCCTTCAGCAGCTGAAATGCATTTTGGAAATAAATCactgtccatctgcactgtcaAGCTCCATCCAGTCCTTTTGAAGCAtctggctgaatgtgagcagataaAATAGACAGCAGATGAAACTTCAGATTTCGTCCTGCTGCTTTTATAAGCAGTCCTTTCATCAGTACATACAAAGGACCCTGTTCCACTGGCAGACGTACACACCCAGGCCATAACATGAGGTTTTctgcttcagatcatgagcagttccttcccttctccacaCTCTTCTCCTCCCATCATTCTGCATCAGTCtgtgacatgaaaatgaataaggaatatttctgaaatgtctGTAAAAAGCCTCTAAAGCAGTGCAACAGGCATGTGGGACAAATTATTAATCAGTGATCTCATTCAGATGTGTGCTGCAGTTGCTCGGTGAGTTTCATTTTACTTTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412274 lncRNA downstream 822 917601 ~ 924667 (-) False LOC113527995
XR_004577124.1 lncRNA downstream 88151 830810 ~ 837338 (-) False LOC117595934
TU412047 lncRNA downstream 90593 833363 ~ 834896 (-) True LOC117595934
TU412034 lncRNA downstream 92559 830983 ~ 832930 (-) True G347758
XR_004577125.1 lncRNA downstream 95648 826664 ~ 829841 (-) True LOC117595935
TU412466 lncRNA upstream 32356 1733906 ~ 1859612 (-) True G348079
TU412254 lncRNA upstream 33363 1734913 ~ 1742300 (-) True G347900
TU412259 lncRNA upstream 61661 1763211 ~ 1766929 (-) True G347905
TU412476 lncRNA upstream 83475 1785025 ~ 1866074 (-) True G348088
TU412483 lncRNA upstream 88567 1790117 ~ 1871146 (-) True G348092
XM_034299228.1 mRNA downstream 840 856780 ~ 924649 (-) False LOC113527995
XM_034299229.1 mRNA downstream 866 856780 ~ 924623 (-) False LOC113527995
XM_034299230.1 mRNA downstream 866 856780 ~ 924623 (-) False LOC113527995
XM_034299226.1 mRNA downstream 866 856780 ~ 924623 (-) False LOC113527995
XM_034299227.1 mRNA downstream 866 856780 ~ 924623 (-) True LOC113527995
XM_034299290.1 mRNA upstream 185102 1886652 ~ 1892126 (-) True fam151b
XM_026939781.2 mRNA upstream 185102 1886652 ~ 1892125 (-) False fam151b
XM_026939782.2 mRNA upstream 185102 1886652 ~ 1892124 (-) False fam151b
XM_026939783.2 mRNA upstream 185522 1887072 ~ 1892126 (-) False fam151b
XM_034299260.1 mRNA upstream 190718 1892268 ~ 1898413 (-) False ccdc125
XR_004577138.1 other downstream 866 864220 ~ 924623 (-) False LOC113527995
TU411959 other downstream 557754 364006 ~ 367735 (-) True LOC113528009
XR_004577111.1 other downstream 688217 230525 ~ 237272 (-) False LOC117595925
XR_004577112.1 other downstream 689125 230525 ~ 236364 (-) True LOC117595925
TU411850 other downstream 714847 206493 ~ 210642 (-) False LOC113528266
TU412500 other upstream 126348 1827898 ~ 1828645 (-) True G348096
TU412577 other upstream 294352 1995902 ~ 1998470 (-) True G348145
TU412644 other upstream 477993 2179543 ~ 2185944 (-) False LOC113542580
TU412645 other upstream 477993 2179543 ~ 2231567 (-) False LOC113542580
TU412757 other upstream 936205 2637755 ~ 2664375 (-) False zmat4a

Expression Profile