RNA id: TU412244


Basic Information

Item Value
RNA id TU412244
length 698
lncRNA type sense_over
GC content 0.41
exon number 2
gene id G347896
representative False

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 919384 ~ 1701550 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttcattcagatTGTTACACTGACAGAACAGATGCATTGTGGGAGAGATTTGGGTCGTACAGATGTGAAAACGTGTTTACTGGAttgttatttgctttaaatcgagttaaataataaataatggaatCAGTGCCGTGTCATTTAGttgatttgtgttttctctgagtGCTGATCATCCAGCATGAGCTCCTGCTTCTGCTGTGTTCACTCCTGTTCTTTTCCACTTTAGTCCAATCTGTTCAACACCAATCACATCTGAAGCCCCAGTTTCTGTCTGATACGAAGCACAAATCAGCTCCACAAACAGCTACTGAGGAAAATCTCACTGGAGTAAAAGCTAAAAGATGTAAATCAAACCTCTCATGTACTGACATTATGATCTGAATTCAATTCTACAGTAAATCATGTTGTAAATGTACAGAGTAAAGAAGCTCagaatcactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagttcaccCGATGGCAGATGAGAGTTCGTCCGTCGTACCCAAAGCTTCAAAAACACGATCCTCTTTCGGCCGCCTCTCTCCTGTGAAAGTGCTGGAAAACCcttaaagaataaaatggaCGTAAAACAGTCCCATTCTGAGGCTCAGTGTGAAATAATGCTGGTGTAAATGCTGAGGCTGAATGTGTTCATGTCCATGTACAaagtgagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412383 lncRNA downstream 44983 1401856 ~ 1402831 (-) True G348011
TU412236 lncRNA downstream 58498 925489 ~ 1389316 (-) False G347896
TU412216 lncRNA downstream 58584 919384 ~ 1389230 (-) False G347896
TU412222 lncRNA downstream 87907 925489 ~ 1359907 (-) False G347896
TU412240 lncRNA downstream 87907 925489 ~ 1359907 (-) False G347896
TU412270 lncRNA upstream 28703 1496410 ~ 1496871 (-) True G347916
TU412386 lncRNA upstream 60018 1527725 ~ 1530278 (-) False LOC113542373
XR_004577149.1 lncRNA upstream 115013 1582720 ~ 1605702 (-) True LOC117595968
TU412255 lncRNA upstream 164484 1632191 ~ 1638134 (-) True G347901
TU412446 lncRNA upstream 178971 1646678 ~ 1710908 (-) False LOC117595719
XM_034299283.1 mRNA downstream 5622 1433006 ~ 1442192 (-) True LOC113528310
XM_026911400.2 mRNA downstream 16333 1425099 ~ 1431481 (-) True LOC113524989
XM_034299353.1 mRNA downstream 27108 1350316 ~ 1420706 (-) True LOC113524983
XM_034299285.1 mRNA downstream 78382 1358558 ~ 1369432 (-) True LOC113524988
XM_034299352.1 mRNA downstream 131427 1314499 ~ 1316387 (-) True LOC113528146
XM_026939866.2 mRNA upstream 37932 1505639 ~ 1530394 (-) False LOC113542373
XM_026939867.2 mRNA upstream 37932 1505639 ~ 1530394 (-) True LOC113542373
XM_034299297.1 mRNA upstream 37932 1505639 ~ 1512287 (-) False LOC113542373
XM_034299296.1 mRNA upstream 37933 1505640 ~ 1512342 (-) False LOC113542373
XM_026939849.2 mRNA upstream 67888 1535595 ~ 1558524 (-) True slc6a4b
TU412226 other downstream 37139 1157791 ~ 1410675 (-) False G347896
TU412381 other downstream 78352 1356568 ~ 1369462 (-) False LOC113524988
TU412230 other downstream 149908 1157791 ~ 1297906 (-) False G347896
TU412323 other downstream 368675 1076733 ~ 1079139 (-) True G347960
XR_004577138.1 other downstream 523191 864220 ~ 924623 (-) False LOC113527995
XR_003404300.2 other upstream 39908 1507615 ~ 1530394 (-) False LOC113542373
XR_003404299.2 other upstream 59885 1527592 ~ 1530388 (-) False LOC113542373
XR_004577143.1 other upstream 61071 1528778 ~ 1530394 (-) False LOC113542373
trnak-uuu_19 other upstream 130763 1598470 ~ 1598542 (-) True trnak-uuu_19
TU412500 other upstream 360191 1827898 ~ 1828645 (-) True G348096

Expression Profile