RNA id: TU412254


Basic Information

Item Value
RNA id TU412254
length 517
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G347900
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 1734913 ~ 1742300 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATCCTCCACCTGTTAAATCAGCACAGAGTCTTTATTATCTGCTGCAGCAATAAATCAGCTTTCACTGTAAATCTGGAGTTTTAGAGGAAAGTGTTTCTCCGACCTCTCACAGGCTGCACTAACTCCTTCTCCAAGCTGCTGTGCTGAATCACGCAGGTGTAGTTGTGTTTCTGCAGCTCCTCAGCTGGAACTGTCAGAATGCTTCTCTTCTGGAAGCTTCCATCCTGGTTGGGTAACGTCTCTCTGAGCTCCACGTTCTCATGCACCTCCTCTCCGTCCTTCTGCCAGGTGATATTCAGTGCTTTGGGGAAGAAACCTGTAGCATGACACACCACCTCCGGAGGAGTCGAGTGTTTCTGGAACACTGACGCCTCGGGACGAACTGCAGAGACACAAAgtgacataaatattaaaacactctgtcagatttattcatttataatgtaaatgacaCATAGCTTTATAGTTTCTTCATTATATGCTCATAGCTTTatagtttctttctttattttcttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412446 lncRNA downstream 24005 1646678 ~ 1710908 (-) False LOC117595719
TU412445 lncRNA downstream 24005 1691927 ~ 1710908 (-) False LOC117595719
TU412255 lncRNA downstream 96779 1632191 ~ 1638134 (-) True G347901
XR_004577149.1 lncRNA downstream 129211 1582720 ~ 1605702 (-) True LOC117595968
TU412386 lncRNA downstream 204635 1527725 ~ 1530278 (-) False LOC113542373
TU412259 lncRNA upstream 20911 1763211 ~ 1766929 (-) True G347905
TU412476 lncRNA upstream 42725 1785025 ~ 1866074 (-) True G348088
TU412483 lncRNA upstream 47817 1790117 ~ 1871146 (-) True G348092
TU412497 lncRNA upstream 52530 1794830 ~ 1875756 (-) True G348094
TU412511 lncRNA upstream 63696 1805996 ~ 1942711 (-) True G348103
XM_034299267.1 mRNA downstream 24011 1701052 ~ 1710902 (-) False LOC117595719
XM_034299265.1 mRNA downstream 24011 1701313 ~ 1710902 (-) False LOC117595719
XM_026939849.2 mRNA downstream 176389 1535595 ~ 1558524 (-) True slc6a4b
XM_034299296.1 mRNA downstream 222571 1505640 ~ 1512342 (-) False LOC113542373
XM_034299297.1 mRNA downstream 222626 1505639 ~ 1512287 (-) False LOC113542373
XM_034299290.1 mRNA upstream 144352 1886652 ~ 1892126 (-) True fam151b
XM_026939781.2 mRNA upstream 144352 1886652 ~ 1892125 (-) False fam151b
XM_026939782.2 mRNA upstream 144352 1886652 ~ 1892124 (-) False fam151b
XM_026939783.2 mRNA upstream 144772 1887072 ~ 1892126 (-) False fam151b
XM_034299260.1 mRNA upstream 149968 1892268 ~ 1898413 (-) False ccdc125
trnak-uuu_19 other downstream 136371 1598470 ~ 1598542 (-) True trnak-uuu_19
XR_003404300.2 other downstream 204519 1507615 ~ 1530394 (-) False LOC113542373
XR_004577143.1 other downstream 204519 1528778 ~ 1530394 (-) False LOC113542373
XR_003404299.2 other downstream 204525 1527592 ~ 1530388 (-) False LOC113542373
TU412381 other downstream 365451 1356568 ~ 1369462 (-) False LOC113524988
TU412500 other upstream 85598 1827898 ~ 1828645 (-) True G348096
TU412577 other upstream 253602 1995902 ~ 1998470 (-) True G348145
TU412644 other upstream 437243 2179543 ~ 2185944 (-) False LOC113542580
TU412645 other upstream 437243 2179543 ~ 2231567 (-) False LOC113542580
TU412757 other upstream 895455 2637755 ~ 2664375 (-) False zmat4a

Expression Profile