RNA id: TU412260


Basic Information

Item Value
RNA id TU412260
length 2473
lncRNA type sense_over
GC content 0.43
exon number 4
gene id LOC113524981
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 1268309 ~ 1278867 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTGGAAAGGACtacactgaaaatgttctcaCCAGGAATACGTATTATTCCTCATCGGGGTTAGCATCAGGCAtttataaatgaagaaaaagagttttaatatttatgtctctgtgtgtctctgcagttAGGTCCGAAGGCCAGTGTTCCAGAAACACTCTCCTTCTCCAGAGGTGGTGTGTCATGCTACAGGTTTCTTCCCCAAAGCAGTGGTGATCTCCTGGCAGAAGGACGGAGAGGAGGTGCATGAGAACGTGGAGCTCAGAGAGACGTTACCCAACCAGGATGGAAGCTTCCAGAAGAGAAGCATTCTGACAGTTCCAGCTGAGGAGCTGCAGAAACACACCTACACCTGCGTGATTCAGCACAGCAGCTTGGAGAAGGAGTTAGTGCTGCCTGTGAGAGATGGAGCACCGATTGCTATCATCGTTGCTGTAGTCGCGGCTCTCGTTGTTCTCGTTGCCGTTGTTGCTGGAATTGTGGtctggaagaagaagaactctgGCTTCAATCCTGTTCCACCCAAACCCTgagagaggagaagagggagaTGAGGACAGAGTTTAATGGAGATTAAAGATTGTTTCGACTCGCACACAGCTTCTGTCCTCCATTACACTGAGGGTGACATCATCAAGGCAGCGGTGTTTCAGCTGGAAGGAAGCTGGTGTCCGGCACTGCTCGGTGTTGTGTGCTCCATATTTTGTTCTGATAAGTCCGGATCACAATGACTGAGATGTGCCAGTCTGTTAGTGTTATAAAGAGCTCTTAAGtagcttttaaacttttaaaattcactttggggatggtgttctcagtgTAGTGAGAGTTACTGGGCTTTCTTCATGTTGCTGTTCCATAAAGCTCAGCTTTGTGCAGTGTCTGGTTTATGGTTGTTCTGTGCTTTCTGCCATCTGAGTTGTGGATCTCTCCAGTTCCTTCAGAGTTACTCTTGGCCTCTTGGTCGTTTCTCTAACTTATCCCCTCTTTACCTGATACCTGATATTTGGTGGACAGCCTCTTCTAGGCAGAGTcacagttgtgccatattcttttcatttttttaaacaatggatTTAATGGCGCTTTGAGGGAGGCTCAAAGTTTGGTATTGTTTTATAAACAAATGAGTTCTTTTTCTGACCAAACATACTGTTTCCTTTACCGTCATTTACTACTTTTAAACGTTTGGTATCAACTGCCACTCTACAGGTGTCCTCAGAAACTGGTGACATGCTGAATCCTGAATTCTGATAGTTTCAAATCCTGAACACCAAATTCTGCAAACCTCCTCCCACTGTTTTTTCTGACACtctcacaatctcacacacactgtctacaGTATTTCTACTCTGGAGTCACACCAGGAATACGTTTCCCAGATTTCTGAGCACTGACCGTCTGGTCGATGGAGCAGTATATGTACTACGACAACAGCAAGATGAGGAAGATGATCCCAAAGACAGAGTGGATAAAGAAGACTGATGCTGATGAGGACATCTTTAGTCAGTATGGCTACAGCAATGCAGCTCTTTGATGAGACTGAAGGTGACAGTCGAACCTACTCAGAGCTGTTagcactgatacacacactaattacattcacacacacacacacacacacacacaccagccagcCCTGAGGCAACAATGTAACATCAGCAGTAGCCTTTCTTTACATTTCTTCATCTAGACGTTGATCTAGACGTGATTAgtgtaaaatagttttttttcgtTGTTCAATATAATAGTTTAGCAACATTATCTAAACTACTTAAATGCAGAATAACAATGAGTTGTGCCAACGAATATACATTTATCATCCAGTTTATTAGGAAATGTGTAGACCTGCATATTCATACAATGATCCCGTTATctgtggcgtggttgttggtaccggacagactggtttgagttcCTCAGAATCTGTCCTGCTCACTTAACGTGTTTTGTGTAAACTATGCTCTacactgtgtaaactctagagactcttgggtgtgaaaattccaggagatcagcagttactgtaatactcaaaccagcccatctggcaaccaccatgccatggttaatgtcagagatcacacttttccacattctgaagctcctgacctgtgtctgcaggattttatgtattatgctgctgccacatgattagattttggataattgcatgaacgtgtgggtgtacaggtgttcctaataaagtggccagtgagtgtattgTGTAAGTAAACCCAATAGACATGTCAAAATTAGATAAACGTTTGATGTCATATGAAGAaggctctgattggctgatgaaaCGCTTactgaagctccgccccttgtTGCCTCAGAGACCACATACacaacatatacacactctGATAGTACACACATTATGTGCTGTAAAATCATGTCACACTTCTAACAGAATATAGTTGCATGTAAAAGCACTTTTcctaatgaacatgactgacatctcaatCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577150.1 lncRNA downstream 2188 1264805 ~ 1266121 (-) True LOC117595969
TU412372 lncRNA downstream 36468 1231235 ~ 1231841 (-) True G348003
TU412347 lncRNA downstream 91139 1174117 ~ 1177170 (-) True G347980
TU412326 lncRNA downstream 165425 1083752 ~ 1102884 (-) True G347963
TU412231 lncRNA downstream 194608 1056423 ~ 1073701 (-) False G347896
XR_004577145.1 lncRNA upstream 38530 1309689 ~ 1311494 (-) True LOC117595965
XR_004577144.1 lncRNA upstream 67649 1338808 ~ 1339841 (-) True LOC113524984
TU412383 lncRNA upstream 130697 1401856 ~ 1402831 (-) True G348011
TU412384 lncRNA upstream 137802 1408961 ~ 1463632 (-) True G348012
TU412244 lncRNA upstream 176655 1447814 ~ 1467707 (-) False G347896
XM_034299263.1 mRNA downstream 10367 1251870 ~ 1257942 (-) True LOC117595953
XM_034299350.1 mRNA downstream 28260 1236871 ~ 1240049 (-) True LOC117595980
XM_026911379.2 mRNA downstream 37661 1188924 ~ 1230648 (-) False tchp
XM_034299351.1 mRNA upstream 22715 1293874 ~ 1297808 (-) True LOC117595981
XM_034299352.1 mRNA upstream 43340 1314499 ~ 1316387 (-) True LOC113528146
XM_034299353.1 mRNA upstream 79157 1350316 ~ 1420706 (-) True LOC113524983
XM_034299285.1 mRNA upstream 87399 1358558 ~ 1369432 (-) True LOC113524988
XM_026911400.2 mRNA upstream 153940 1425099 ~ 1431481 (-) True LOC113524989
TU412323 other downstream 189170 1076733 ~ 1079139 (-) True G347960
XR_004577138.1 other downstream 343686 864220 ~ 924623 (-) False LOC113527995
TU411959 other downstream 900574 364006 ~ 367735 (-) True LOC113528009
XR_004577111.1 other downstream 1031037 230525 ~ 237272 (-) False LOC117595925
TU412381 other upstream 85409 1356568 ~ 1369462 (-) False LOC113524988
XR_003404300.2 other upstream 236456 1507615 ~ 1530394 (-) False LOC113542373
XR_003404299.2 other upstream 256433 1527592 ~ 1530388 (-) False LOC113542373
XR_004577143.1 other upstream 257619 1528778 ~ 1530394 (-) False LOC113542373
trnak-uuu_19 other upstream 327311 1598470 ~ 1598542 (-) True trnak-uuu_19

Expression Profile