RNA id: TU412322


Basic Information

Item Value
RNA id TU412322
length 585
lncRNA type read_through
GC content 0.42
exon number 2
gene id G347959
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 1069718 ~ 1464481 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GttggacagaaaaatatatttacatatttaataatacacacataaaatctctaaatgtgtagtttttaaagaataaagtcatttttcatgtcgatatttaaatatgaaaaccaCAGgacagaaaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttacagtaacagAGCAGATCACACACTTTACCTTTCCTCTCCAGAGTCTCTCTGCCGTAAGACACGTACTTCTTTAACCACTCGATACAGATGTTCTCCAGGTAGATCTTCTGGCCCTCAGTCACACCAGGATTATTATCCCACTTGTGTTTGCTGATCACAGCTTGAGGTGTCGGAGCGATCCAGGTTTTAGTTTTCAGATCAAAACTGATGAAATCTTCTCCATCATAACCGAACTGACTGTATCCTCTAGTGGTGCCGTCATCATCGAGCTCACAGCCGTACATCATCTGCCATGTGTgaactcctgcacacacacacacacacacacacacacacacacagatgagagtGATGAGGTTCAGCTGAGCTCCGTCTCCTTCTACACTCTCCATTCAAACATCACACTACACTTTACTCTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412318 lncRNA downstream 31521 1036539 ~ 1038197 (-) False G347955
TU412317 lncRNA downstream 32386 1036539 ~ 1037332 (-) True G347955
TU412274 lncRNA downstream 145051 917601 ~ 924667 (-) False LOC113527995
XR_004577124.1 lncRNA downstream 232380 830810 ~ 837338 (-) False LOC117595934
TU412270 lncRNA upstream 31929 1496410 ~ 1496871 (-) True G347916
TU412386 lncRNA upstream 63244 1527725 ~ 1530278 (-) False LOC113542373
XR_004577149.1 lncRNA upstream 118239 1582720 ~ 1605702 (-) True LOC117595968
TU412255 lncRNA upstream 167710 1632191 ~ 1638134 (-) True G347901
TU412446 lncRNA upstream 182197 1646678 ~ 1710908 (-) False LOC117595719
XM_026911376.2 mRNA downstream 60124 1005640 ~ 1009594 (-) True kctd10
XM_034299288.1 mRNA downstream 60654 1005640 ~ 1009064 (-) False kctd10
XM_026911375.2 mRNA downstream 89029 976948 ~ 980689 (-) True foxn4
XM_034299229.1 mRNA downstream 145095 856780 ~ 924623 (-) False LOC113527995
XM_026939866.2 mRNA upstream 41158 1505639 ~ 1530394 (-) False LOC113542373
XM_026939867.2 mRNA upstream 41158 1505639 ~ 1530394 (-) True LOC113542373
XM_034299297.1 mRNA upstream 41158 1505639 ~ 1512287 (-) False LOC113542373
XM_034299296.1 mRNA upstream 41159 1505640 ~ 1512342 (-) False LOC113542373
XM_026939849.2 mRNA upstream 71114 1535595 ~ 1558524 (-) True slc6a4b
XR_004577138.1 other downstream 145095 864220 ~ 924623 (-) False LOC113527995
TU411959 other downstream 701983 364006 ~ 367735 (-) True LOC113528009
XR_004577111.1 other downstream 832446 230525 ~ 237272 (-) False LOC117595925
XR_004577112.1 other downstream 833354 230525 ~ 236364 (-) True LOC117595925
TU411850 other downstream 859076 206493 ~ 210642 (-) False LOC113528266
XR_003404300.2 other upstream 43134 1507615 ~ 1530394 (-) False LOC113542373
XR_003404299.2 other upstream 63111 1527592 ~ 1530388 (-) False LOC113542373
XR_004577143.1 other upstream 64297 1528778 ~ 1530394 (-) False LOC113542373
trnak-uuu_19 other upstream 133989 1598470 ~ 1598542 (-) True trnak-uuu_19
TU412500 other upstream 363417 1827898 ~ 1828645 (-) True G348096

Expression Profile