RNA id: TU412326


Basic Information

Item Value
RNA id TU412326
length 395
lncRNA type read_through
GC content 0.42
exon number 2
gene id G347963
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 1083752 ~ 1102884 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAACTCTGAAGGAACTGGAGAGATCCACAACTCAGATGGCAGAAAGCACAGAACAACCATAAACCAGACACTGCACAAAGCTGAGCTTTATGGAACAGCAACATGAAGAAAGCCCAGTAACTCTCACTAcactgagaacaccatccccaaagtgaagcatggtgatggtagCATCATGGTGTCATTTAAAAGCTACTTAAGAGCTCTTTATAACACTAACAGCCATGTGCGAGTTGAATCCTTAATCTCCATTAAACTCTGTCCTtatctccctctcctcctctctcctagaaaaacacacagaaagaaacaggatCAGCTCTGAGCTGAGGTTTAATGTTAGCACAGGCTTTTCTGCTGGATTTTCACTccacacacagatttttattccatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412231 lncRNA downstream 10051 1056423 ~ 1073701 (-) False G347896
TU412318 lncRNA downstream 45555 1036539 ~ 1038197 (-) False G347955
TU412317 lncRNA downstream 46420 1036539 ~ 1037332 (-) True G347955
TU412274 lncRNA downstream 159085 917601 ~ 924667 (-) False LOC113527995
XR_004577124.1 lncRNA downstream 246414 830810 ~ 837338 (-) False LOC117595934
TU412347 lncRNA upstream 71233 1174117 ~ 1177170 (-) True G347980
TU412370 lncRNA upstream 124242 1227126 ~ 1334937 (-) True G348001
TU412372 lncRNA upstream 128351 1231235 ~ 1231841 (-) True G348003
XR_004577150.1 lncRNA upstream 161921 1264805 ~ 1266121 (-) True LOC117595969
TU412376 lncRNA upstream 161979 1264863 ~ 1284995 (-) False LOC117595969
XM_026911376.2 mRNA downstream 74158 1005640 ~ 1009594 (-) True kctd10
XM_034299288.1 mRNA downstream 74688 1005640 ~ 1009064 (-) False kctd10
XM_026911375.2 mRNA downstream 103063 976948 ~ 980689 (-) True foxn4
XM_034299229.1 mRNA downstream 159129 856780 ~ 924623 (-) False LOC113527995
XM_034299300.1 mRNA upstream 3036 1105920 ~ 1108648 (-) True LOC117595672
XM_034299256.1 mRNA upstream 86040 1188924 ~ 1230648 (-) False tchp
XM_026911379.2 mRNA upstream 86040 1188924 ~ 1230648 (-) False tchp
XM_026911382.2 mRNA upstream 86040 1188924 ~ 1230648 (-) True tchp
XM_026911381.2 mRNA upstream 86040 1188924 ~ 1194558 (-) False tchp
TU412323 other downstream 4613 1076733 ~ 1079139 (-) True G347960
XR_004577138.1 other downstream 159129 864220 ~ 924623 (-) False LOC113527995
TU411959 other downstream 716017 364006 ~ 367735 (-) True LOC113528009
XR_004577111.1 other downstream 846480 230525 ~ 237272 (-) False LOC117595925
XR_004577112.1 other downstream 847388 230525 ~ 236364 (-) True LOC117595925
TU412226 other upstream 54907 1157791 ~ 1410675 (-) False G347896
TU412230 other upstream 54907 1157791 ~ 1297906 (-) False G347896
TU412381 other upstream 253684 1356568 ~ 1369462 (-) False LOC113524988
XR_003404300.2 other upstream 404731 1507615 ~ 1530394 (-) False LOC113542373
XR_003404299.2 other upstream 424708 1527592 ~ 1530388 (-) False LOC113542373

Expression Profile