RNA id: XM_034299296.1


Basic Information

Item Value
RNA id XM_034299296.1
length 2402
RNA type mRNA
GC content 0.38
exon number 6
gene id LOC113542373
representative False

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 1505639 ~ 1530394 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atctgcatgattttatgcattgtgtttctgccacctgattggatgattagataactgcataataAAGTGGAAGGTGAGTGTACCTGTAGCCAACCTGTAATACAGATTTATACAGGTCATTGTCTCTGGTAGCGTTGTGGGAGCGCATCTGCGTTCACAGTGGTTGTTTGTTTATACAAATCTACAGCCTCCTTTCATACTGGACCGTGTGAATTATGTCACTATCTGGTGTTGGCGATGTTCAGGTTTCTGTTTCACGTGCTGTGTTAGACACACCTGAATTCACCTGTAACATATAGAAGAGGATGTTCTCACTGTTCTgttcttcatttcttcttcCACTTTGTTGATGTTTTGATGAAAAACTAATTGAGCAAATGGATCTCAGACTTGCTCTGAAGAAACTCCTTCTTTCCCTCatgattatttttcctcatgcatcagcagtcacacactctgTGCAGTACCTCTACACTGCCCTCACACCAGGAATAAATCTCACTGCTGTTGGTCTGCTGGATGGACAGCAGTTTGTGTACTATGACAGCAACATCAGGAAGACGATCCCAAAGACGGAGTGGGTAAAGAAGATCAGCGCTGATGATCCAGATTACTGGAACAGACTGACGCAGCGTATGCAGAGAGATCAGGAGAACCTCAAACAGCTCTTAGATACAGTAATGAAAGACTTTAATCACACTGAAGgaggtCACACACTACAGAGGACGTACGGCTGTGAGCTTGATGATGACGGCACCGCTAGAGGAAACGATCAGATCCGTTATGATGGAGAAGATTTCATCAGCCTGGATCTGAAAACTGGAACCTGGACTGCAGTTAATGATAAAGCTCTGATCACCAAAGAGAAGTGGGAGACTGTAGGACCCGATGCTAATATCCAAAAGAACTACCTAGAGAAAGAGTGTATCGAGTGGTTAAAGAAGTACGTGTCTTACAGCAGAGAGACTGTGAAGAGGAAAGGTGGAGGATTAAGTGGATTGCAGACTGCGATCATCACTGTTTCAGTCGTGGCTTTTTTTGCTCTCCTTGCTGGGCTTATCATCTGTAAAAAATGCAAATCTGGTCACGAAGGCTACATTGCACGAGCAGACATCTTAGAGTTATAACGTCGACTAAACTGCAAACTGAGAGCAGAACACACAAAGACTAACACGCTGCACTGCTGTTCATTCAGAGCAAGCAAAGGATAAGGATCAGATGCTCGAgctgcattctctctctccaccatGAACCAAAAACAATTTAAAGTAAGACTATGTAAATCTAggcaggaaaagaaaatactttATTGTATGTGCCTAGTTTTATCTGTTTTGAGTGACCTGAAGCTGCAAactgcattctctctctctctctctctctctctctctctctcatttataCGTGTGTATTTCATGGTTGCTGCATTTCAATATTATtctaataatgtttaaataacgGAGTCAAGTTAGTTATTAtagaacatttttaaagtttttttaaacatgtttatatttactgattaaagcgatttaaaaaaaaatcagtcatgtTTTAAGCTGTTAATAACATCTGTTCAGggagaaattattttatttggacTTTCACATGTGTGAATTtgttcttaaatattttttcatttaaaaagattttacatatttcacttttatgcatgaaaatgtataaatattattcaaataatgCCTTGAAAATTTCCAATTGttataagtaaataaagagTCAGGTTAGTTATTATAGGAcacctttttaatgtttttgtctttttgtttatttatttggcgATTGTCTGAGACTATCTGCCCTTaacctttctctcctttttcagGGTTTCTGTGagatttagttttatttagatttttacattttagatttaGTGTCATTTCAGTTGTTTGCAcacattataattaataaaaaaaacactcagaggACATTTTGTTAAATGAATATCAGCTGTTCTTGTAGTTATATAATGCAGTCACTTTTCTTTAAGACATTTTCACATCAAAACTACAAACTCCAATCCCAGATTTCAGTGAAACGATTCAGTCTGATTATTTATAGGACTTCCATAGTGAAATAAGTAGCAGCATCACATGGCCTGAGTCCCCGGTCCTACCCCACACCCCCTCACACATCCCCCCACCTTCCTGCTGttcttattattagggggccaagcaccaagaTTTAGCGCGTCCACAAGGATTTAGGCTTTTCTTATTGAATTGCttttctgtatcattttgtttAGTCTGTGGCGAGAACACTGATtatgattaaactgtaataagagtaataaataactgaaatatttattaataatttcagGGAAATGAAAAGAAGGGAAAATTCTTGCTGTTATTCTTAGTAATATTTTTGtgatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412270 lncRNA downstream 8769 1496410 ~ 1496871 (-) True G347916
TU412225 lncRNA downstream 37933 925489 ~ 1467707 (-) True G347896
TU412223 lncRNA downstream 37933 961551 ~ 1467707 (-) False G347896
TU412244 lncRNA downstream 37933 1447814 ~ 1467707 (-) False G347896
TU412245 lncRNA downstream 39409 925489 ~ 1466231 (-) False G347896
TU412386 lncRNA upstream 15383 1527725 ~ 1530278 (-) False LOC113542373
XR_004577149.1 lncRNA upstream 70378 1582720 ~ 1605702 (-) True LOC117595968
TU412255 lncRNA upstream 119849 1632191 ~ 1638134 (-) True G347901
TU412446 lncRNA upstream 134336 1646678 ~ 1710908 (-) False LOC117595719
TU412445 lncRNA upstream 179585 1691927 ~ 1710908 (-) False LOC117595719
XM_034299283.1 mRNA downstream 63448 1433006 ~ 1442192 (-) True LOC113528310
XM_026911400.2 mRNA downstream 74159 1425099 ~ 1431481 (-) True LOC113524989
XM_034299353.1 mRNA downstream 84934 1350316 ~ 1420706 (-) True LOC113524983
XM_034299285.1 mRNA downstream 136208 1358558 ~ 1369432 (-) True LOC113524988
XM_034299352.1 mRNA downstream 189253 1314499 ~ 1316387 (-) True LOC113528146
XM_026939849.2 mRNA upstream 23253 1535595 ~ 1558524 (-) True slc6a4b
XM_034299267.1 mRNA upstream 188710 1701052 ~ 1710902 (-) False LOC117595719
XM_034299265.1 mRNA upstream 188971 1701313 ~ 1710902 (-) False LOC117595719
XM_034299290.1 mRNA upstream 374310 1886652 ~ 1892126 (-) True fam151b
XM_026939781.2 mRNA upstream 374310 1886652 ~ 1892125 (-) False fam151b
TU412226 other downstream 94965 1157791 ~ 1410675 (-) False G347896
TU412381 other downstream 136178 1356568 ~ 1369462 (-) False LOC113524988
TU412230 other downstream 207734 1157791 ~ 1297906 (-) False G347896
TU412323 other downstream 426501 1076733 ~ 1079139 (-) True G347960
XR_004577138.1 other downstream 581017 864220 ~ 924623 (-) False LOC113527995
XR_003404299.2 other upstream 15250 1527592 ~ 1530388 (-) False LOC113542373
XR_004577143.1 other upstream 16436 1528778 ~ 1530394 (-) False LOC113542373
trnak-uuu_19 other upstream 86128 1598470 ~ 1598542 (-) True trnak-uuu_19
TU412500 other upstream 315556 1827898 ~ 1828645 (-) True G348096
TU412577 other upstream 483560 1995902 ~ 1998470 (-) True G348145

Expression Profile