RNA id: XM_034299266.1


Basic Information

Item Value
RNA id XM_034299266.1
length 3708
RNA type mRNA
GC content 0.44
exon number 8
gene id LOC117595719
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 1450335 ~ 1710908 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCCTGAGTTTTCCTCAGTGTTAGCTCGCTAGCGCTGAGCTCCTGCTCCGTGGTAAACACTGTGTTAACTTTACTCCAGTGTGTCGCCGCTTATATAAAGGATTTCACCAGATATTAGTTACggaagtgtttatttctgttgaAAGTCTACAGAGTAAGATGGAGGACAGCAGCAGTATATTAAAAGCTCTGCTTTTCCTCACATTTTCTGTTCATCTTTCATCAGCAGtcacacactctctgCGATACCTCTACACTGCCATCACACCTGGAATAAATTTCCCAGAGGTCACTGCTGTTGGTCTGGTAgatggagagcagtttgtgTACTACGACAGTAACATCAAGAAGCTGATCCCAAAGACAGAGTGGATACTGAAGGTCGAAGCTGATGATCCAGATTACTGGAAGAAAGAGACTGAGCGTGTGCGGGATCAACAGGCCTGGCTCCGAAACAATGTGGCTACAGTAAAGCAGAGCTTTAATCAAACTGAAGgAGTTCATATGTTACAGTGGATGTACGGCTGTGAGCGTGATGATGACGGCACCAATAGAGGATACGATCAGTACGGTTATGATGGAGAAGATTTTATCAGTCTGAATCTGAAAAATGCAACCTGGACTGCAGCTAAACCTCAAGCTGTGATCTTTATAAACAACTGGCATCCTAGAGGAGCTGAGGCTAAATACTGGAAGGACTTCCTGGAGAATGACTGTATTGATTGGTTAAAGAAGTACGTGTCTTACGGCAGAGAGAGGAAAGttcGTCCCAAGGCGTCACTGTTCCAGAAGGAGTCCTCTCCAGAGGTGGTGTGTCATGCTACAGGTTTCTTCCCCAAAGCAGTGATGATCTCCTGGCAGAAGGACGGAGAGAAGGTGCATGAGAACGTGGAGCTCAGAGAGACGTTACCCAACCAAGATGGAAGCTTCCAGAAGAGAAGCATTCTGACAGTTCCAGCTGAGGAGCTGCAGAAACACAACTACACCTGCATGATTCAGCACAGCAGCTTGGAGAAGGAGTTAGTGCTGCCTGTGAAAGGTGGAGGATCAGGTGGAGGATCAGGTGGAGGATCAGGTGGAGGATCAGGTGGAGGATCAGGTGAAGGATCAGGTGAAGGATCAGCTGGAGGATCAGGTGCTATCGTCGTTGCTGTAGTCGCGGCTCTCGTTGCTCTCGTTGCCGTTGTTGCTGGAATTGTTGtctggaagaagaagaactctgGcttcaaacctgttccagccaAACCCTCCTCTGAAGAAGATTTACTCCCAACAGCTTAGTGGGACTGTGTGTCTTCCTGCTGAACTGAGAGAgagagaggaggagagggagataAGGACAGAGTTTAACGGAGATTAAAGATTGTTTCGACTCGCACACAGCTTCAGTCCTCCGTTACACTGAGGGTGACGTCATCAACAGGCAGCGGTGTTTCAGCTGGAAGGAAGCTGGTGTCCGGCTCTGCTCGGTGTTGTGTCGTGTGCTCCATACTTTATTCTGTTGATTAGTGATTCTGATTTTGAACTCTGTCCTGACACTGAGCTCAATTGGTCCCTCGTGCTTAGAATACTTGGTCTCTGTATATAGTTTGCATCTTTATATATAGTAACTATTTTCtacaatgtaaatatatttttcacctTATGTACAGCTttacatgctctctctctctctgtctctctctctctctctctctcttttctctatctatctatctgtctatccacaGTCCCTTCCAAAACTTTGGAACGGTAAGGCCAATTCATCAAAAGGTGGATATGAGACAAAAGTTtaggatttcagcttttatttccttaatttgGATGCATTTGGATAAATTGGCATTCAAAATGTTCCTGTAAACTTCtgtcatgagttacatcatcaataaggATTattgagcctgttccagaagcagccatgcaagcccaagccatgacactatctcaccatgcttgactgatgagcttgtatgttttggatcatgagcagatccattccttctccacactttggcctttccatcactttagtacaggttaatcttggttccagaacttttgtggctcatatCTGTATTTCATTGTGAATTCCAGTATGGCTTTGTGATTCCtgctgctgatgagtggtttgcatcttgtgttCTTGTGAATGTTGGAAACATTCATTcaagattctggtccatgttgacatgattgcattatgcagttattcagatttttcaggtgcactttaaTGCTAcaaatctcccgttctaccacatcgcAAAGGTGTtatattggattcagatcttgTGACTGGGAacgccactgaagaacactgaactcattgtcatgttcttgaaaccagtttgagacaacgtttgctttgtgacatggtgcatgaTCCTACTGGaaatagccattagaagatgggtaaattatggccatgaagggaggcacatggtcagcaacaatattcaAATAAGCCGTGGCATTCAAGCACTGATAGGTATTAATGGCCCCAGactgtgccaagaaaacattccccacaccattgggtccatggattcaagctgttggtgccaaatcaaatcctaccatctgtgtgcttcagcagaaattgagattcatcagaccaggttgTGTTTTTCCATTCTCCAGTCTAGTTTGGGTGaccctgtgcccactgcagcctcagcgtTTTTGAAATAAGTAGCTTTTTAAATGACACAATGATGctaccatcaccatgcttcacattGAGGATCGTCTTCACAGCATATTGAGTAGGACTGGGCTTTCTTCTTGTTACTGTTATATAAAGCCCAGCTTTATGCAGTGTCTGGTTTATGGTTGTTCTGTGCTTTATGCCATCTGAGCTGTGGCTCTCTTCAGTtccttcagagttacccttgCTCTCTTTGTTGTTTCTCTAACTAATCAGAGTCAGTAATCAGAGAGAgttttttaacaatggatttaatggtgctgtgagggatgttcaaagttttgtattgttttgatAAGCAAAAGAGttatttttctaaacaaataTACTGTTTTCTTTACCATCATTTagtatttttatacttttggtATCAACTGCCACTCTACAGGTGTCCCCAGAAACTGGCGACATGCTGAATCCTGAGTTCTGATTGTTTGAAATCCCAAACACCAAATTCTGCAAACCTCCTCCCACTGTTTTTTCCGACACtctcacaatctcacacacGCTGTCTACAGTATTTCTACTCTGGAGTCACACCAGGAATACGTTTCCCAGAATTCAGCACTGTCAGTCCGGTCGATGGAGCAGTATGTGTACTACAACAGCACGGTCAGGAAGATGATCCTGACAGAGTGGAAAAAAGGAGATTGATGCCGATGAGCCATACAGCCATGCAGCTCTTTAACAAGACTGAAGGTGAGAGCCAGGTGACTCTCAACATTATCTAATTATTAATTGCAGAATAACAATGAATTATGCCAACCAATATACATTTATCATGCAGTTTATTAGGAAATGTGTAgctctgcacattcatgcaatgaTCCAATTATctgtggcgtggttgttggtaccggacagactggtttgagttcCTCAGAATCTGTCCTGCTCACTGaacctgttttgttttttacaccaTGGTGTacaccctacactctacactgtgtaaactctagagactcttgttccagatcagcagttactgtaatact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412383 lncRNA downstream 47504 1401856 ~ 1402831 (-) True G348011
TU412236 lncRNA downstream 61019 925489 ~ 1389316 (-) False G347896
TU412216 lncRNA downstream 61105 919384 ~ 1389230 (-) False G347896
TU412222 lncRNA downstream 90428 925489 ~ 1359907 (-) False G347896
TU412240 lncRNA downstream 90428 925489 ~ 1359907 (-) False G347896
TU412466 lncRNA upstream 23004 1733906 ~ 1859612 (-) True G348079
TU412254 lncRNA upstream 24011 1734913 ~ 1742300 (-) True G347900
TU412259 lncRNA upstream 52309 1763211 ~ 1766929 (-) True G347905
TU412476 lncRNA upstream 74123 1785025 ~ 1866074 (-) True G348088
TU412483 lncRNA upstream 79215 1790117 ~ 1871146 (-) True G348092
XM_034299283.1 mRNA downstream 8143 1433006 ~ 1442192 (-) True LOC113528310
XM_026911400.2 mRNA downstream 18854 1425099 ~ 1431481 (-) True LOC113524989
XM_034299353.1 mRNA downstream 29629 1350316 ~ 1420706 (-) True LOC113524983
XM_034299285.1 mRNA downstream 80903 1358558 ~ 1369432 (-) True LOC113524988
XM_034299352.1 mRNA downstream 133948 1314499 ~ 1316387 (-) True LOC113528146
XM_034299290.1 mRNA upstream 175750 1886652 ~ 1892126 (-) True fam151b
XM_026939781.2 mRNA upstream 175750 1886652 ~ 1892125 (-) False fam151b
XM_026939782.2 mRNA upstream 175750 1886652 ~ 1892124 (-) False fam151b
XM_026939783.2 mRNA upstream 176170 1887072 ~ 1892126 (-) False fam151b
XM_034299260.1 mRNA upstream 181366 1892268 ~ 1898413 (-) False ccdc125
TU412226 other downstream 39660 1157791 ~ 1410675 (-) False G347896
TU412381 other downstream 80873 1356568 ~ 1369462 (-) False LOC113524988
TU412230 other downstream 152429 1157791 ~ 1297906 (-) False G347896
TU412323 other downstream 371196 1076733 ~ 1079139 (-) True G347960
XR_004577138.1 other downstream 525712 864220 ~ 924623 (-) False LOC113527995
TU412500 other upstream 116996 1827898 ~ 1828645 (-) True G348096
TU412577 other upstream 285000 1995902 ~ 1998470 (-) True G348145
TU412644 other upstream 468641 2179543 ~ 2185944 (-) False LOC113542580
TU412645 other upstream 468641 2179543 ~ 2231567 (-) False LOC113542580
TU412757 other upstream 926853 2637755 ~ 2664375 (-) False zmat4a

Expression Profile