RNA id: XM_034299267.1


Basic Information

Item Value
RNA id XM_034299267.1
length 1273
RNA type mRNA
GC content 0.47
exon number 7
gene id LOC117595719
representative False

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 1450335 ~ 1710908 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCCTGAGTTTTCCTCAGTGTTAGCTCGCTAGCGCTGAGCTCCTGCTCCGTGGTAAACACTGTGTTAACTTTACTCCAGTGTGTCGCCGCTTATATAAAGGATTTCACCAGATATTAGTTACggaagtgtttatttctgttgaAAGTCTACAGAGTAAGATGGAGGACAGCAGCAGTATATTAAAAGCTCTGCTTTTCCTCACATTTTCTGTTCATCTTTCATCAGCAGtcacacactctctgCGATACCTCTACACTGCCATCACACCTGGAATAAATTTCCCAGAGGTCACTGCTGTTGGTCTGGTAgatggagagcagtttgtgTACTACGACAGTAACATCAAGAAGCTGATCCCAAAGACAGAGTGGATACTGAAGGTCGAAGCTGATGATCCAGATTACTGGAAGAAAGAGACTGAGCGTGTGCGGGATCAACAGGCCTGGCTCCGAAACAATGTGGCTACAGTAAAGCAGAGCTTTAATCAAACTGAAGgAGTTCATATGTTACAGTGGATGTACGGCTGTGAGCGTGATGATGACGGCACCAATAGAGGATACGATCAGTACGGTTATGATGGAGAAGATTTTATCAGTCTGAATCTGAAAAATGCAACCTGGACTGCAGCTAAACCTCAAGCTGTGATCTTTATAAACAACTGGCATCCTAGAGGAGCTGAGGCTAAATACTGGAAGGACTTCCTGGAGAATGACTGTATTGATTGGTTAAAGAAGTACGTGTCTTACGGCAGAGAGAGGAAAGttcGTCCCAAGGCGTCACTGTTCCAGAAGGAGTCCTCTCCAGAGGTGGTGTGTCATGCTACAGGTTTCTTCCCCAAAGCAGTGATGATCTCCTGGCAGAAGGACGGAGAGAAGGTGCATGAGAACGTGGAGCTCAGAGAGACGTTACCCAACCAAGATGGAAGCTTCCAGAAGAGAAGCATTCTGACAGTTCCAGCTGAGGAGCTGCAGAAACACAACTACACCTGCATGATTCAGCACAGCAGCTTGGAGAAGGAGTTAGTGCTGCCTGTGAAAGGTGGAGGATCAGGTGGAGGATCAGGTGGAGGATCAGGTGGAGGATCAGGTGGAGGATCAGGTGAAGGATCAGGTGAAGGATCAGCTGGAGGATCAGGTGCTATCGTCGTTGCTGTAGTCGCGGCTCTCGTTGCTCTCGTTGCCGTTGTTGCTGGAATTGTTGtctggaagaagaagaactctgACTTCAAACTTGTTCTACCCATAACCCTGCTCTAacagtgtgactgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412255 lncRNA downstream 62918 1632191 ~ 1638134 (-) True G347901
XR_004577149.1 lncRNA downstream 95350 1582720 ~ 1605702 (-) True LOC117595968
TU412386 lncRNA downstream 170774 1527725 ~ 1530278 (-) False LOC113542373
TU412270 lncRNA downstream 204181 1496410 ~ 1496871 (-) True G347916
TU412225 lncRNA downstream 233345 925489 ~ 1467707 (-) True G347896
TU412466 lncRNA upstream 23004 1733906 ~ 1859612 (-) True G348079
TU412254 lncRNA upstream 24011 1734913 ~ 1742300 (-) True G347900
TU412259 lncRNA upstream 52309 1763211 ~ 1766929 (-) True G347905
TU412476 lncRNA upstream 74123 1785025 ~ 1866074 (-) True G348088
TU412483 lncRNA upstream 79215 1790117 ~ 1871146 (-) True G348092
XM_026939849.2 mRNA downstream 142528 1535595 ~ 1558524 (-) True slc6a4b
XM_026939866.2 mRNA downstream 170658 1505639 ~ 1530394 (-) False LOC113542373
XM_026939867.2 mRNA downstream 170658 1505639 ~ 1530394 (-) True LOC113542373
XM_034299296.1 mRNA downstream 188710 1505640 ~ 1512342 (-) False LOC113542373
XM_034299297.1 mRNA downstream 188765 1505639 ~ 1512287 (-) False LOC113542373
XM_034299290.1 mRNA upstream 175750 1886652 ~ 1892126 (-) True fam151b
XM_026939781.2 mRNA upstream 175750 1886652 ~ 1892125 (-) False fam151b
XM_026939782.2 mRNA upstream 175750 1886652 ~ 1892124 (-) False fam151b
XM_026939783.2 mRNA upstream 176170 1887072 ~ 1892126 (-) False fam151b
XM_034299260.1 mRNA upstream 181366 1892268 ~ 1898413 (-) False ccdc125
trnak-uuu_19 other downstream 102510 1598470 ~ 1598542 (-) True trnak-uuu_19
XR_003404300.2 other downstream 170658 1507615 ~ 1530394 (-) False LOC113542373
XR_004577143.1 other downstream 170658 1528778 ~ 1530394 (-) False LOC113542373
XR_003404299.2 other downstream 170664 1527592 ~ 1530388 (-) False LOC113542373
TU412381 other downstream 331590 1356568 ~ 1369462 (-) False LOC113524988
TU412500 other upstream 116996 1827898 ~ 1828645 (-) True G348096
TU412577 other upstream 285000 1995902 ~ 1998470 (-) True G348145
TU412644 other upstream 468641 2179543 ~ 2185944 (-) False LOC113542580
TU412645 other upstream 468641 2179543 ~ 2231567 (-) False LOC113542580
TU412757 other upstream 926853 2637755 ~ 2664375 (-) False zmat4a

Expression Profile