RNA id: TU412500


Basic Information

Item Value
RNA id TU412500
length 465
RNA type TUCP
GC content 0.55
exon number 2
gene id G348096
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 1827898 ~ 1828645 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGGGTTTGCGcggttttattttcactttcgTTCTCTCGCCCAGTGAGCGGTTTGTTCCGAGGATCTGGGAGAAAACATTAATGACAAAGCAGTTCCTGTAGAACATGGCCCTCCTGGTGCTCCTCCTGTGTTTGTGCTCCGTGTCATCGTCTTGGACTGCAGTGACGCAAGCCAGAGAAGAAACCGAGTCCTCCTTCCCAACATCGACCAGCGGAGAGACGTTCCCCTGGAACAAGATGAGGCTTCCAGAGACCGTCTCTCCGTTTCATTACACTCTCCTCATCCACCCCAACCTCACCAGCCTCGACTTCACAGGGAGAGTGAAGATCCGAGTGGACGTCctccaggacacacacaccatcGTCCTCCACAGCAAGGAGCTCAACATCTCCAGAGCCGTTCTCCGCAGTTTGGCTGAAGGTCAGAGCCAGGCTCTCAGGGTGCTGGAGTATCCGGCCTACCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412452 lncRNA downstream 32364 1693143 ~ 1795534 (-) True G348067
TU412259 lncRNA downstream 60969 1763211 ~ 1766929 (-) True G347905
TU412254 lncRNA downstream 85598 1734913 ~ 1742300 (-) True G347900
TU412446 lncRNA downstream 116990 1646678 ~ 1710908 (-) False LOC117595719
TU412445 lncRNA downstream 116990 1691927 ~ 1710908 (-) False LOC117595719
TU412516 lncRNA upstream 153409 1982054 ~ 2021135 (-) False arvcfb
TU412574 lncRNA upstream 157538 1986183 ~ 1987047 (-) True G348143
TU412579 lncRNA upstream 204912 2033557 ~ 2033864 (-) True G348147
TU412614 lncRNA upstream 283018 2111663 ~ 2181860 (-) True G348180
TU412635 lncRNA upstream 312971 2141616 ~ 2142102 (-) True G348200
XM_034299266.1 mRNA downstream 116996 1450335 ~ 1710902 (-) True LOC117595719
XM_034299267.1 mRNA downstream 116996 1701052 ~ 1710902 (-) False LOC117595719
XM_034299265.1 mRNA downstream 116996 1701313 ~ 1710902 (-) False LOC117595719
XM_026939849.2 mRNA downstream 269374 1535595 ~ 1558524 (-) True slc6a4b
XM_026939866.2 mRNA downstream 297504 1505639 ~ 1530394 (-) False LOC113542373
XM_034299290.1 mRNA upstream 58007 1886652 ~ 1892126 (-) True fam151b
XM_026939781.2 mRNA upstream 58007 1886652 ~ 1892125 (-) False fam151b
XM_026939782.2 mRNA upstream 58007 1886652 ~ 1892124 (-) False fam151b
XM_026939783.2 mRNA upstream 58427 1887072 ~ 1892126 (-) False fam151b
XM_034299260.1 mRNA upstream 63623 1892268 ~ 1898413 (-) False ccdc125
trnak-uuu_19 other downstream 229356 1598470 ~ 1598542 (-) True trnak-uuu_19
XR_003404300.2 other downstream 297504 1507615 ~ 1530394 (-) False LOC113542373
XR_004577143.1 other downstream 297504 1528778 ~ 1530394 (-) False LOC113542373
XR_003404299.2 other downstream 297510 1527592 ~ 1530388 (-) False LOC113542373
TU412381 other downstream 458436 1356568 ~ 1369462 (-) False LOC113524988
TU412577 other upstream 167257 1995902 ~ 1998470 (-) True G348145
TU412644 other upstream 350898 2179543 ~ 2185944 (-) False LOC113542580
TU412645 other upstream 350898 2179543 ~ 2231567 (-) False LOC113542580
TU412757 other upstream 809110 2637755 ~ 2664375 (-) False zmat4a
TU412979 other upstream 956032 2784677 ~ 2785896 (-) True G348491

Expression Profile