RNA id: TU412516


Basic Information

Item Value
RNA id TU412516
length 1482
lncRNA type sense_over
GC content 0.43
exon number 2
gene id arvcfb
representative False

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 1982054 ~ 2127645 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAGAAAACCaaaacaaaaaacaaaaaaaagtcaagacAAACTGTTTATACATTGCTAGACATCTGCGAGTTTCAGATCAGGATGCAAGGCATAAAGCGTCACcttctttgtaaaaaaaaaaaaaaaatcactaaataaaaaaaatctactgaaagagagagtaaTTGTGTATGAAAAGGCAGTGGAGGAACGCTCGTCGTCTGTTTGTGTTCCAGGAAAATGTTATCTTGGCTGGtgtttttacaccacagcggGTTGATGTaatcagagagaaaacagacaaCAGTGTCAAAAGCACGGATTCAGGCTTCGggctaaatgtaaaaatgtattatttggtGTAAATCAGTGTGTAAGACCTCAGCGGTTAAGGGTCAGCTGGTGAGCGTGACCCTGGGCCCTGAACCTCAGCTCTGTGATTGGACtggattggattctgcctcactCGCTGTAAATGTGATGTAAATGTCAGACATTTCCACGCTGTAGAGGGAATACAGAATGATGGATCACTCACAGGTGGGACGAGAGACATGAACGACGGCGTCACTCCGTTTTCTCGCGTGTAGATTATTGTGGAAGGAGGCGCCAGGATGTGGTGAAGGTGTGATCTGTAACATCAGCTGTAAGCACGCAGCATGTGCCTGCTGTATCCCTCCGCGCGCCTCATCGTGTGACACGCTTGCAgtgggcttttttttcttttttctttttatagtgttataaccaAGACGTctaacaccaacaacagcagaaaagtTGTCAGTAGCTTTGTGtattaactttacatttttttttgtttgttttgtttttggaaagATGAACTGTACTCCGTATCCCCCCCTCATCCAGactgcctttttttgtttgtttgtttcgcAGTACACAACCAAAGGACTTTGGGATTGTATATTCTGAAGTTGGATCTACGAGCGTGAATAAGATTGTATATTTACCGAAAAGGGTGGAAAAGTGGAATCGAGACCTACCTTTGTAGATATCActcaaaaccacacacacacacacacacacacacacacggtaaaTGTACAACTCGGTAGCAAACGTGTTTGTAACTATCATATGTGCCTTAACCCTTCTCTGTGTTAGATCGAGAATAACTGTGTTTTCTATTAAGCTctttgttgttcctctttccgATTCCCATTCTCTctatcccctctctctctctctctctctctctctctctctctctctctctcactccatgTCCTCAGTGTAGTCTAGACTGGTGGTGGGTTTTTGCCTTGTGTTTTACATTGTACTCTATAGACACACTAAACGGGGTCGATGACGTAGAGGAGAACGTCGCTCATGCTTTCGTAGTGCTCGATGCCACGATGCTCCAGAATGTATTCCGTTCATTTTACTAATCCCCTGATGGGAACACAGCACTTGTTAGAATCCAGCGGAGATTTGTAGGGTATCACTTTGGTGTGTTTTCAATAAATCATGCCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412511 lncRNA downstream 39343 1805996 ~ 1942711 (-) True G348103
TU412497 lncRNA downstream 106298 1794830 ~ 1875756 (-) True G348094
TU412483 lncRNA downstream 110908 1790117 ~ 1871146 (-) True G348092
TU412476 lncRNA downstream 115980 1785025 ~ 1866074 (-) True G348088
TU412466 lncRNA downstream 122442 1733906 ~ 1859612 (-) True G348079
TU412579 lncRNA upstream 12422 2033557 ~ 2033864 (-) True G348147
TU412614 lncRNA upstream 90528 2111663 ~ 2181860 (-) True G348180
TU412635 lncRNA upstream 120481 2141616 ~ 2142102 (-) True G348200
XR_004577113.1 lncRNA upstream 221073 2242208 ~ 2242816 (-) True LOC117595926
TU412672 lncRNA upstream 284990 2306125 ~ 2308604 (-) True G348233
XM_034299249.1 mRNA downstream 13915 1951629 ~ 1968139 (-) True erap1b
XM_034299248.1 mRNA downstream 13939 1951629 ~ 1968115 (-) False erap1b
XM_026939931.2 mRNA downstream 74481 1901159 ~ 1907573 (-) True rad17
XM_026939612.2 mRNA downstream 81990 1892269 ~ 1900064 (-) True ccdc125
XM_034299260.1 mRNA downstream 83641 1892268 ~ 1898413 (-) False ccdc125
XM_034299307.1 mRNA upstream 135851 2156986 ~ 2163920 (-) True rnf181
XM_026940198.2 mRNA upstream 143338 2164473 ~ 2166382 (-) False LOC113542577
XM_026940201.2 mRNA upstream 143338 2164473 ~ 2166382 (-) False LOC113542577
XM_026940200.2 mRNA upstream 143338 2164473 ~ 2166382 (-) True LOC113542577
XM_034298933.1 mRNA upstream 148200 2169335 ~ 2177813 (-) True LOC113542514
TU412500 other downstream 153409 1827898 ~ 1828645 (-) True G348096
trnak-uuu_19 other downstream 383512 1598470 ~ 1598542 (-) True trnak-uuu_19
XR_003404300.2 other downstream 451660 1507615 ~ 1530394 (-) False LOC113542373
XR_004577143.1 other downstream 451660 1528778 ~ 1530394 (-) False LOC113542373
XR_003404299.2 other downstream 451666 1527592 ~ 1530388 (-) False LOC113542373
TU412644 other upstream 158408 2179543 ~ 2185944 (-) False LOC113542580
TU412645 other upstream 158408 2179543 ~ 2231567 (-) False LOC113542580
TU412757 other upstream 616620 2637755 ~ 2664375 (-) False zmat4a
TU412979 other upstream 763542 2784677 ~ 2785896 (-) True G348491
XR_004577129.1 other upstream 793723 2814858 ~ 2964889 (-) False unc5db

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) TU147415 True 1558 lncRNA 0.35 2 CM030135.1 16083353 ~ 16121445 (+)