RNA id: XM_026940306.2


Basic Information

Item Value
RNA id XM_026940306.2
length 4069
RNA type mRNA
GC content 0.55
exon number 18
gene id arvcfb
representative False

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 1982054 ~ 2127645 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTGGGACATCTCTCCTCCGTGTCGGTCTGTAGCGGAGGATGTCCTTTCTCTAACTCGTCCTGCTCCACTAACCTCTAGTGCAAAGTCCGAGCGGACATGGAGGAGTACGAGGCGCGTTCGGCCGCCAGCATCCTGGCCTCGGTTAAAGAGCAGGAGGCGAGGTTTGAGCAGCTGACGCGGGCGCTTGAGGAAGAGCGACGCCACGTCTCACTGCAGCTGGAGCGCGCCAACATGCCATGCGCCGACCACCTCCCGTGGCAGCAGGTGGTCATGCAGGAGCAGAGTCCCAGCAACCAGACGTCTCTGGCCATGATGCAGGAGCCGcaggaggtggtggaggagaCGGTCACTATAGAGGAGGACCCCGGCACGCCCACTTCACACGTCTCCGTGGTGACGTCAGACGATGGAACCACGCGCCGCACAGAGACCAAGGTGACCAAGATGGTGAAGACAGTGACGACCCGCACTGTGCGTCAGGTCCCGCTGGGTCCCGATGGTCTGCCGGTTCCCGACGGCTCTTCGCCGCTGGGCAGCTACACAGACTCCATCGACCGTCGCTTCATGAAGAACGGCGAGCGCTTCGTCACACCTCAGGCCACGTCCACGCTCACACGCTCCTACAACCACAGCAACTATGGCGACTCGTTCTACAGCCCACACGACGCCTACGGGGACGTTTGCGACAACTACGGCAGCCTCTCCCGTGGCCTCAACTACCGGCCCTACCGGCCCTACGGCTACCGCATGGAGAACAGCTACACCCTCCCCATCCGCAGGGACGACTACGGGCACATGGCACAGCCACAAGTACCTGTGGGCGGCAGCAGCACCCTGGACCTCAATCGCTCGCAGCCGGAGCGCTTCCAGCCCGAGCCGTATGGACTGGAGGACGACCGGCGCAGCCTCGGGCCGGACGACGAAGAGCCGTACGAGCTGGAGCCTGACTACTCCACCGCCAACCGCCGCACACTGCCCACCGCTGCACGCGCCATGAGGGACCCGCTGCGCAATGGCCCTCGCATCAGAGGCTACGATGACCCCATTGAGTCTGAACTAATTGATGAGCGGCACCGCTATGCTCCTGGCATGTACCCCGCCCCGCTTGCACAGCCCGAGCGGGGCAGCACGGCCAGCTTGGATGGTGGCATCGATGGTGGCATCGCACGTCAGGACCCACGCTGCTGGCGTGACCCGGACCTCCCCGAGGTCATTGCTATGCTGGGCCACCCTCTCGATCCGGTCAAGGCCAATGCCGCCGCCTACCTGCAGCACCTGTGCTACGAGAACGACGCGGTGAAGAAGGCCGTGCGACAGCTGAATGGCATCCCAGCTCTAGTGGCCTTGCTCGAGCACCCCAAGGGCGAAGTGCAGCGCAAGGCATGTGGAGCTCTGCGCAACCTCTCCTTCGGCAAGGACAATGAAAACAAGGCGGCCATTAGGAGCTGCGATGGCATCCCCGCTCTCGTTCGCCTGCTCAGGAAAAGCGGCGACGCCGAGGTCCGCGAGCTTGTCACAGGAACGTTGTGGAATTTGTCCTCGTACGAGCCATTGAAGATGGTGATCATAAACCACGCTCTGCAGACCATGACCAACGAGGTGATCATCCCGCACTCGGGCTGGGAGGCTGAGCCCAACGAGGACTCGAAGCCCCGGGACGCCCAGTGGACCACCGTCTTCAAGAACACATCCGGATGCCTGCGaaacgTGAGCTCGGACGGCGCGGAGGCGCGCAGGAGGCTGCGGGAATGCGACGGACTGGTGGACGCCCTGCTCCATGCCCTACTGTCAGCCGTGGGGAAGAAGGACATGGATAACAAGtcTGTGGAGAACTGCGTGTGCATCATGAGGAACCTTTCCTACCACGTTCACAAAGAGGTCCCGGGAGCGGAGAAGTACCAGGACCCGTCCTCTCTTCAGGCTCCCGGCTCCACGGGGACGCACAGGAAGAAGAAGGACGACGCTGGTTGCTTCGGTGGCAAGAAGGCTAAAGAGGAATGGTTTAATCAAGggAGGAGAAACGGGGACAACGACAAAAACTACGACACGATGGATCTCCCGAAGCGCACAGAGCCTACTAAAGGGTTCGAGTTGCTCTACCAGCCCGAGGTGGTGCGTCTCTATCTGTCCCTGCTGACCGAGAGTCAGAACTACAACACCTTGGAGGCGGCAGCAGGGGCCTTACAGAACCTCAGCGCTGGACAGTGGACCTGGTCCAACTACATCCGGGCGACAGTGCGTAAGGAGAAAGGCCTGCCGATCCTGGTGGAGCTGCTCCGCTCCGACTCGGATAAGGTGGTGCGCGCCATCGCCATCGCCCTGCGTAACCTCTCCATCGACCGACGCAACAAAGACCTTATAGGGAGCTACGCGATGAGGGATTTGGTGAGTAACCTGCCGAGCGGTCAGCAGCGTCCAGCCAAGAACCTGGAGGAGGACACGGTGGTGGCGGTGCTCAACACCATCCACGAGATTGTGACAGACAGCTCGGAGAACGCTCGCTCGCTCATCATGGCTCAGGCCATCGATAAACTGGTGGCCATCCACAGGACCAGCCAGTCAGCCCGAGAGACCAAGGCTGCTTCTCACATCCTGCAGACGGTGTGGAGCTACAAAGAGCTGAGGAACACCCTCACCAAGGACGGCTGGAACAAGACTCATTTCCAGCCCACGGCGACCGTTGCTCCGAAAGGCTCAAAGAGCAGCAAGTCAGGATACGATGACACCACCCTCCCCCTGATGGAGAAGAGCCAAGACGGTTATTCCACTATTGACCAAAGGGACAAAGACTGCAAATATAAAACCAGCGACGCCTCGTCGGATCTGACAGAGCGAGAGCCTCTGAAGAATGACACGAATAGGAAGCACTATATCCGGAGCAACAGGCCGGCAGTGAGTCTTGTGGATGCTTGCGATGTCAAGCCTCAGCCTGTTGACTCCTGGGTGTAAATGCATGCATGGCTTAGCCAGCGTCAGCGCTACATCACAACCAGTCAAAGGATCTCACAAGACACGAGTCACCACTGCCATTTTCTCCACGATTCGCCAACGTGGACTCATCAGCaaagagacaaacaaaaaaaaaaacaacacacagcgCATTCTTTAGTTTGGCGAGATGAAATGAAACGGAACGACggacagcagcaacaacacacaaaaaaaaatgtacatttctcaCACACGTGCATTCCCACGGCGTGACGAGGATCCGAGCAGCACGACACGAACTCCATGGATGGATGAAGGAAGGATGAAGGATGAAGGATGAGTGCAGCAGGGAAAGTGAAAGTGGGGAGAGGTGGACATGAAGGTGTATGGAAAAGAAATAGACTGAAAGGAAAAtatttagtttgtgtttttttttttttttagttttgtttacttgtttttttgtttcttattttcttctgtttcatgttttttttatatatatatattatggaTATTGCTCTTTTTATGGAAGTGAAGATGGTGGATTGAAGGATGTGTTCTGAGGGGAGAAGAAACGTTTGTGGGTTGTGTATTGGTTTGAAATTTTAAGTGTGACAgaacttagaaaaaaaaaaaccattgtgTCGTGACGTTCTGCTAATTTTGTCTGTGAAGCGGTTCCATGCTCCAGTCTTTCGTACTTCAGTGCACGGTGTTGGTGTCGCCTTTGTACTATAATTCACCCAGCAGTGTTTAACAGTGAATCGCTAACCGTGAATGTATGCTAACAGGGGCGTGTTTGCATCATCGCGTTCGCTAACAGGCCAGGTGGCGTTTGTCGGTAGCaggattagcattagcatcccTGCTAACGTGGCGATCGTGCTGCGCTCCGGGTTGGATTAACACGATTAAGAAACGGAAAAGGGAGGATGGTGTGGATCGTTTTTGAGGCACGCTAtcacattttaaagcatttgatatttttgttgctgttgtaaaTGTACATtcgaaagaaaacaaaaaacaaaaaaaagtcaagacAAACTGTTTATACATTGCTAGACATCTGCGAGTTTCAGATCAGGATGCAAGGCATAAAGCGTCACcttctttgtaaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016339 calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412511 lncRNA downstream 40697 1805996 ~ 1942711 (-) True G348103
TU412497 lncRNA downstream 107652 1794830 ~ 1875756 (-) True G348094
TU412483 lncRNA downstream 112262 1790117 ~ 1871146 (-) True G348092
TU412476 lncRNA downstream 117334 1785025 ~ 1866074 (-) True G348088
TU412259 lncRNA downstream 216479 1763211 ~ 1766929 (-) True G347905
TU412614 lncRNA upstream 49762 2111663 ~ 2181860 (-) True G348180
TU412635 lncRNA upstream 79715 2141616 ~ 2142102 (-) True G348200
XR_004577113.1 lncRNA upstream 180307 2242208 ~ 2242816 (-) True LOC117595926
TU412672 lncRNA upstream 244224 2306125 ~ 2308604 (-) True G348233
TU412719 lncRNA upstream 338956 2400857 ~ 2401493 (-) True G348264
XM_034299249.1 mRNA downstream 15269 1951629 ~ 1968139 (-) True erap1b
XM_034299248.1 mRNA downstream 15293 1951629 ~ 1968115 (-) False erap1b
XM_026939931.2 mRNA downstream 75835 1901159 ~ 1907573 (-) True rad17
XM_026939612.2 mRNA downstream 83344 1892269 ~ 1900064 (-) True ccdc125
XM_034299260.1 mRNA downstream 84995 1892268 ~ 1898413 (-) False ccdc125
XM_034299307.1 mRNA upstream 95085 2156986 ~ 2163920 (-) True rnf181
XM_026940198.2 mRNA upstream 102572 2164473 ~ 2166382 (-) False LOC113542577
XM_026940201.2 mRNA upstream 102572 2164473 ~ 2166382 (-) False LOC113542577
XM_026940200.2 mRNA upstream 102572 2164473 ~ 2166382 (-) True LOC113542577
XM_034298933.1 mRNA upstream 107434 2169335 ~ 2177813 (-) True LOC113542514
TU412500 other downstream 154763 1827898 ~ 1828645 (-) True G348096
trnak-uuu_19 other downstream 384866 1598470 ~ 1598542 (-) True trnak-uuu_19
XR_003404300.2 other downstream 453014 1507615 ~ 1530394 (-) False LOC113542373
TU412644 other upstream 117642 2179543 ~ 2185944 (-) False LOC113542580
TU412645 other upstream 117642 2179543 ~ 2231567 (-) False LOC113542580
TU412757 other upstream 575854 2637755 ~ 2664375 (-) False zmat4a
TU412979 other upstream 722776 2784677 ~ 2785896 (-) True G348491
XR_004577129.1 other upstream 752957 2814858 ~ 2964889 (-) False unc5db

Expression Profile