RNA id: TU412614


Basic Information

Item Value
RNA id TU412614
length 513
lncRNA type read_through
GC content 0.39
exon number 2
gene id G348180
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 2111663 ~ 2181860 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CgggtctgtttttattttctattcttatCCTCTCTTTGACGTAAGACAGGTCACATCCTCTTGCCCGTATTTCTCTCTTGCGTCCGtcagaacaattttttttaaagctttctgTACGGGAATCAGGAAGGCCAGTAAACACACTAATCATGCTTTCTGGCCCTCAGCAGGCTATAGTATAGTTAACAAATCTTTCCACGGTTCCAAGGCCTAACAGGAAATGTCATATTGAAGTCTATAAATACACTGTAGGTTAGTGTTTATGGGGACAGAAGAATGTAGAATTGACATCCTGATTTTTTGCTGACAGGGTTAATTTTAGAAAGCTATTTCCTTTTGTGATTAGATGAATgaagcaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtATGGTTTGGATAATCATTCTGATATCGGCAGCCGTTTCTTAGAGAAGAGGAATTCCCACAGAGAAATGACAGCTGGACTCCCTCATCACTTTATAATTGCGCTTTAAGTTTATTAGAGATGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412579 lncRNA downstream 77799 2033557 ~ 2033864 (-) True G348147
TU412516 lncRNA downstream 90528 1982054 ~ 2021135 (-) False arvcfb
TU412574 lncRNA downstream 124616 1986183 ~ 1987047 (-) True G348143
TU412511 lncRNA downstream 168952 1805996 ~ 1942711 (-) True G348103
TU412497 lncRNA downstream 235907 1794830 ~ 1875756 (-) True G348094
XR_004577113.1 lncRNA upstream 60348 2242208 ~ 2242816 (-) True LOC117595926
TU412672 lncRNA upstream 124265 2306125 ~ 2308604 (-) True G348233
TU412719 lncRNA upstream 218997 2400857 ~ 2401493 (-) True G348264
TU412721 lncRNA upstream 219173 2401033 ~ 2401493 (-) False G348264
TU412742 lncRNA upstream 241855 2423715 ~ 2424331 (-) True G348283
XM_026940307.2 mRNA downstream 49761 1983408 ~ 2061902 (-) False arvcfb
XM_026940304.2 mRNA downstream 49761 1983408 ~ 2061902 (-) False arvcfb
XM_026940305.2 mRNA downstream 49762 1983408 ~ 2061901 (-) False arvcfb
XM_026940308.2 mRNA downstream 49762 1983408 ~ 2061901 (-) False arvcfb
XM_026940306.2 mRNA downstream 49762 1983408 ~ 2061901 (-) False arvcfb
XM_026939754.2 mRNA upstream 9725 2191585 ~ 2199551 (-) True vamp8
XM_034299412.1 mRNA upstream 19856 2201716 ~ 2209741 (-) False ncaph
XM_034299411.1 mRNA upstream 19856 2201716 ~ 2209741 (-) True ncaph
XM_034299099.1 mRNA upstream 71121 2252981 ~ 2282993 (-) False tacr1a
XM_026939880.2 mRNA upstream 71121 2252981 ~ 2282992 (-) True tacr1a
TU412577 other downstream 113193 1995902 ~ 1998470 (-) True G348145
TU412500 other downstream 283018 1827898 ~ 1828645 (-) True G348096
trnak-uuu_19 other downstream 513121 1598470 ~ 1598542 (-) True trnak-uuu_19
XR_004577143.1 other downstream 581269 1528778 ~ 1530394 (-) False LOC113542373
XR_003404299.2 other downstream 581275 1527592 ~ 1530388 (-) False LOC113542373
TU412757 other upstream 455895 2637755 ~ 2664375 (-) False zmat4a
TU412979 other upstream 602817 2784677 ~ 2785896 (-) True G348491
XR_004577129.1 other upstream 632998 2814858 ~ 2964889 (-) False unc5db
XR_003404311.2 other upstream 974182 3156042 ~ 3166254 (-) False tm2d2
XR_004577114.1 other upstream 1164295 3346155 ~ 3387730 (-) False trpm3

Expression Profile