RNA id: XM_026940205.2


Basic Information

Item Value
RNA id XM_026940205.2
length 2030
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC113542580
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 2179539 ~ 2231567 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtcaatctggcaacccaggaCGAGGGACAGCCTCATGCACATGTGCAACCACAGAGCAGAAAAGGTTCCTTTAAAAACTCAGCACAGAGCACTGAGCTCAGAGAACCTAGCGGGAAGCAAGAGctcacacgcacatgcacacacacacatagactcatacacacatacacacatacacacacacacacaagacaaagacaaataCGAGACAGGCTTCAGGACCAGAGCTGCTGGAGGTTTAAGGCTGTCTTTCGGATGTCCTTTAGAAGACGTCAGTGACCCAAGtgcagagacaaagacagaaacgATGACCAACATGGAGAACGGGCGAAGCCAGCTGCAGCAGGCTCAGCAGGACGTGGAGGAGGTTCGCGTGATCATGTTGGAGAACCTGAACAAGGCCAGTGAGCGTGAGGGGAAACTGGGAGACCTGGAGAACAGAGCTGACCAGCTACTGGAACagAGCAAGGTTTTTTCCAAAACTGCAAACCAAGTGAAGCAAAAAAAGCAATGGGAGAACATGAAGATGAAGGTGATCCTGGCAGTCATCGTTggagtggtggtggtggtggctgTCGTCATAATTGCTGTGTTAAACGTTAATCGTTAAGTTAATCGGTACTGAGTGAAAAACAATTCCGGTTGACGTGCAAAAAGGAAGAGAAGATGaattgctttgtttttgcagGTTGCTCAGGAAATCATGGAGTCGGTTCATTTGTTAAACGCTAGCGTCGGGACTCGTGCTAAAGCGCTGTGTTTGTCCTAGCTtaaaaaatctcagagtgtgttCAAAGATCTGATGGTACTCATGGACACTTGCTGCTGTCTTTGCTTTCATTTCTACATAAGTATCGTCCGTAACTGGCCTCTGTGCAAACATCTGAATAGTTAACCGAACAAATGTGTGTTGGAGGAACCGGTAGATGAGGACACTGAGCTGACGGTGAAGAACTTTCAGAAGCTTTTCTGCTGGAAATGGTGAAGTTGGTCATACTGTTACTCTTCAAACTGAGGAAAGAAGACTGTagatgcattttaaatgtattgaatATGGATTACTGTTGGTGACCATGTATTGATGTGTCGGATCAGTTAACCTCATAGAACCTATAGTACcagtacactcttagaaaaaaaggttccCTATAGCCCTATAAAAAGATTCCCTTTGGCCCAGCTTTGCTGTCGCAGACAAAATCACACctcataaaaaaagaattctttggtggTGAGTTGAGATCTGCAGTCTTAGAACGCACCACGAGACACTCTCACATTATTCACGGCTGATTTAGTGTGACCCAAAACAGCTGGCAGGgtgagaaatgttttattaagaTCTCTGAGCGTGAGCGCTGCTACGACGCTCATCTAAAAtgcaccaataggaggacggcgtAGGACGACGCCAAACTCCCGGGACAGCTACAAGTACGGTAGTGGCGGTGGTGAAACTTAAACGAAACATGGGATTTAAAAGAAGAGAGGTTTGTTGAATTGTGGTTTAAGCACAAGATCATTAAAAATACTGACTTGCTCATATTTTCTGTATGCTCACACCGATGGATGATGCAAACAGAGTGCGGTCATTTTCTgcaatcacaggtctatcgttagaggatcttcatcatataatctgacatatACAACACACATTATTGCACAATCTGATATATAATTTGGCCAAGATTCTATTAggatcttgtacagtgtgactaaaactggtttaaatgggagtaaacagatttttttttttttttaaagcctttaGAAAGCTACATCTATTAACCATCTAAAGAACCCTTGGGGAACCCTCTTTTTTTCCTAAGCGTGCAAACTCACTAAAATGAGTATCAgtaaaaatattacagttgTGACTCTATTGGAAGTTTTTGTCTATAAAAGTTAATAaaccttcatttaaaaagacattCTTGTCATTCAGCATTGTAAGCTGTGTTCTTTAGTATCCGATGTTTCTGAATAAGGTGCATCTGAAATTGATGCTGCTAAAATAAAGCATATG

Function

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412635 lncRNA downstream 37437 2141616 ~ 2142102 (-) True G348200
TU412579 lncRNA downstream 145675 2033557 ~ 2033864 (-) True G348147
TU412516 lncRNA downstream 158404 1982054 ~ 2021135 (-) False arvcfb
TU412574 lncRNA downstream 192492 1986183 ~ 1987047 (-) True G348143
TU412511 lncRNA downstream 236828 1805996 ~ 1942711 (-) True G348103
XR_004577113.1 lncRNA upstream 56128 2242208 ~ 2242816 (-) True LOC117595926
TU412672 lncRNA upstream 120045 2306125 ~ 2308604 (-) True G348233
TU412719 lncRNA upstream 214777 2400857 ~ 2401493 (-) True G348264
TU412721 lncRNA upstream 214953 2401033 ~ 2401493 (-) False G348264
TU412742 lncRNA upstream 237635 2423715 ~ 2424331 (-) True G348283
XM_026940204.2 mRNA downstream 1480 2175537 ~ 2178059 (-) False LOC113542514
XM_034298933.1 mRNA downstream 1726 2169335 ~ 2177813 (-) True LOC113542514
XM_026940098.2 mRNA downstream 6598 2169335 ~ 2172941 (-) False LOC113542514
XM_026940198.2 mRNA downstream 13157 2164473 ~ 2166382 (-) False LOC113542577
XM_026940201.2 mRNA downstream 13157 2164473 ~ 2166382 (-) False LOC113542577
XM_026939754.2 mRNA upstream 5505 2191585 ~ 2199551 (-) True vamp8
XM_034299412.1 mRNA upstream 15636 2201716 ~ 2209741 (-) False ncaph
XM_034299411.1 mRNA upstream 15636 2201716 ~ 2209741 (-) True ncaph
XM_034299099.1 mRNA upstream 66901 2252981 ~ 2282993 (-) False tacr1a
XM_026939880.2 mRNA upstream 66901 2252981 ~ 2282992 (-) True tacr1a
TU412577 other downstream 181069 1995902 ~ 1998470 (-) True G348145
TU412500 other downstream 350894 1827898 ~ 1828645 (-) True G348096
trnak-uuu_19 other downstream 580997 1598470 ~ 1598542 (-) True trnak-uuu_19
XR_004577143.1 other downstream 649145 1528778 ~ 1530394 (-) False LOC113542373
XR_003404299.2 other downstream 649151 1527592 ~ 1530388 (-) False LOC113542373
TU412757 other upstream 451675 2637755 ~ 2664375 (-) False zmat4a
TU412979 other upstream 598597 2784677 ~ 2785896 (-) True G348491
XR_004577129.1 other upstream 628778 2814858 ~ 2964889 (-) False unc5db
XR_003404311.2 other upstream 969962 3156042 ~ 3166254 (-) False tm2d2
XR_004577114.1 other upstream 1160075 3346155 ~ 3387730 (-) False trpm3

Expression Profile