RNA id: TU412672


Basic Information

Item Value
RNA id TU412672
length 2457
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G348233
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 2306125 ~ 2308604 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aTGCATGAAAAATCAAGTCAAATGTGTAGCAGGTGCAAATGATGGAATTACTGGAGTGCACCACGTAAAGTAAATCCCGTCCAAATAGGGCTATACtttgtattaatgtgtttaagATAAAGATCAAACTCTTAGCTCTCCTGTAAAAAATCCTCTAATGTTACAGTGAAGTTTGGTCATGTTTGTAGATGTCAGCACATGTCTTTAACCACAGTAGCATTGAAGAACTGGATGTGTTTCGAGGCAGAAATTTACACAAAAGGTTTGTTCATAACCAACTACCTTGTCTGCCTGACTTCATTTGTTGTGAAAGTCCAAAAAATTCCTTTtaaaaaacttcttttttttttttttttttttgactacaAACTGCAGTCATCAAAGCACCTTTAAAATACCAGTTTTGATCTCCCttagtattttaataatttacaaaagCACTTGCACTTGAGGTTACAGCACATTAACTGACAAAGCACAAATACTGAACAAAAATCgattgcattattataaacattatgttTCTGATCTTCAAAGTGATTTTCTTcttaccattaaaaaaatgtaaaaatcactCGCAAATAGTCAGGGCTATTACGAAATAGCCTGAGGtgtcactggaaaaaaaacaaaaaacgacTAAGTGACTAAGGCAATGAGTTGTCCTGAATTAGTGTCAATTTCTACCCACAGGATTGTAAACAGGAACAGTAGCTTCAAATCGAATGCCTGATTTCATTTCCCAAGAAAAGAAGAATGTCATGAGCGTGACACAGCTAACTAACGTGAAAAATTTCAGAAACAGCGTGAAACAGCTACCATATATGCCACTAGCTGTGTATAATAACTGACTGGACACTGAAGTGATTATGGCTACTTGGTGTAAGCGtacattctggaaaaaaaaaaaaaacattggaatGCATCGATACGGATCAGTACGAAATATGCGTGGATGTTTTTTTGCGTGGTAGTGTTCGATAACGATACTGACACCGCAGTAATGAGTAATAACTTGGAAAGGAacggaacattttatttagctttgtttATGTTCAAGTAGTGGCCTCtttctttataatgttagcGAGTTGATTTTAAATCAAGTTAGCTAGTTACATTAGTTACTTCGGATCTAGAGcaggttttatttcacttcCAAAAAACGTATGTTTCAATCTCAATCCCTCACTGTCAATGATCAATAGCAGCAGActgtcaagaacaacatactgggtaaGAGCTGTAATTTTCACTCACCTAACTTAGCTAGCATCTGCTGCCATGATGAACTCCTCAAATGTTTCATCAGGTGACTTGTATTGAAGGATGATGCTGTAGTTGCTGCTCTGGATATTTCCACCATATGCAGTccaattattaatcattaaatatGCACAGATCGCTTCAGTTTCGTTTGAACGTACAACTAGCATCACCTGGTAATGGATTTCTATTGAAATTGAAATACCTGATATCAGTATTAATATCAATGCATCCCTACTCAAATGGAAACAATCTGATCGttggaaaaaagttaaataaataaatgtaaaaatttaagCTAAGGAACATTTCAATTTCGTAGCTTCAGTTCCTAGTGCCAAATCAATAAGATTAACATCACCTGGCTTTTCTAACATCTACACATACAGTACCTACACACATGTTCATTTACAAAGcgttacaaataaataaaaagcaaatagaaataaataataatttcaccCTGATTTCTGATCcaaattcactttttaaaatgagatgctttaaaaaaaaatctgaacattTCAGTTGTCAATCAAATGATTCACAATTAAAATACAACATGATGAATACAACAAGCTAAACccaacaaatctaaaaaaaatcccttttgTGTAggtaaaaatgtagaaatgtgtttaaaatggattttttaaaaaaaaaaaatcataaaaatcacatcCCTTATGTTCGACAGCTTAGTGAGAAAGTATGCATTGTCTAATTTATAAGGCTCAATGAACCCGGTGCGTAGTGCAAGACTCGACAGTGCAATAAAAGAGCTAGTGCTCTTCATatctaaactgaaaaaaataaattaaaaaaatcacagttaaaTTACAAACAACTGAAGGAGATGCACCTCGGTTCCCTCTACACACGATTGTCTACCTCATCCATTCCGAGCTGGTCTTGTTTTGATAGGTTGAGGGACATCTCAGCCTGCATCTGCTCTAAGGTCACAGGGTCATCAAGATCTGGGCTCAGGGCTTCTGCTTCCGGCTCCGGTTCTGGTTCTGCGTGAGGTATAGGCAGGTAGCCGCCAACACGGGGCAGGCACATGCACCAGCCGGCGCCGGACAGGTCCAGCTCGTTGTAGTTGAATCCAGCCTTCTTGAGTATCTTGAAGTCCACCATGTCTACGGATTCGCTCATCTCCACCAGAAGGTTCCAGAAGATGCAGCTCAACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577113.1 lncRNA downstream 63309 2242208 ~ 2242816 (-) True LOC117595926
TU412614 lncRNA downstream 124265 2111663 ~ 2181860 (-) True G348180
TU412635 lncRNA downstream 164023 2141616 ~ 2142102 (-) True G348200
TU412579 lncRNA downstream 272261 2033557 ~ 2033864 (-) True G348147
TU412516 lncRNA downstream 284990 1982054 ~ 2021135 (-) False arvcfb
TU412719 lncRNA upstream 92253 2400857 ~ 2401493 (-) True G348264
TU412721 lncRNA upstream 92429 2401033 ~ 2401493 (-) False G348264
TU412742 lncRNA upstream 115111 2423715 ~ 2424331 (-) True G348283
TU412771 lncRNA upstream 236811 2545415 ~ 2546515 (-) True G348309
TU412772 lncRNA upstream 237968 2546572 ~ 2548040 (-) True G348310
XM_034299099.1 mRNA downstream 23132 2252981 ~ 2282993 (-) False tacr1a
XM_026939880.2 mRNA downstream 23133 2252981 ~ 2282992 (-) True tacr1a
XM_034299412.1 mRNA downstream 96384 2201716 ~ 2209741 (-) False ncaph
XM_034299411.1 mRNA downstream 96384 2201716 ~ 2209741 (-) True ncaph
XM_026939754.2 mRNA downstream 106574 2191585 ~ 2199551 (-) True vamp8
XM_026940273.2 mRNA upstream 48667 2357271 ~ 2363155 (-) True ogfod2
XM_026940243.2 mRNA upstream 126720 2435324 ~ 2458405 (-) True LOC113542614
XM_026940065.2 mRNA upstream 156968 2465572 ~ 2482183 (-) True LOC113542490
XM_026939656.2 mRNA upstream 292930 2601534 ~ 2664482 (-) True zmat4a
XM_026939548.2 mRNA upstream 392393 2700997 ~ 2712386 (-) True sfrp1a
TU412645 other downstream 74558 2179543 ~ 2231567 (-) False LOC113542580
TU412644 other downstream 120181 2179543 ~ 2185944 (-) False LOC113542580
TU412577 other downstream 307655 1995902 ~ 1998470 (-) True G348145
TU412500 other downstream 477480 1827898 ~ 1828645 (-) True G348096
trnak-uuu_19 other downstream 707583 1598470 ~ 1598542 (-) True trnak-uuu_19
TU412757 other upstream 329151 2637755 ~ 2664375 (-) False zmat4a
TU412979 other upstream 476073 2784677 ~ 2785896 (-) True G348491
XR_004577129.1 other upstream 506254 2814858 ~ 2964889 (-) False unc5db
XR_003404311.2 other upstream 847438 3156042 ~ 3166254 (-) False tm2d2
XR_004577114.1 other upstream 1037551 3346155 ~ 3387730 (-) False trpm3

Expression Profile