RNA id: XM_026939656.2


Basic Information

Item Value
RNA id XM_026939656.2
length 2943
RNA type mRNA
GC content 0.42
exon number 7
gene id zmat4a
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 2601534 ~ 2664482 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

actccATCCCGCCGGCCAATGAGACGCGAGCGGCGGGGCGGAGCGTTTGACCCGCGAGCGAAACGGCAGCGCGCGACCTCGCTTTCCCTTGCCAGTACCGCACGCACGCGCTCCACCGTTGCATGGATTACGGCGTTTCCCTGCAGCTTCAGCACGAGCTCGCCGAGCCCCCGACGCGTTTACCGCGCGACTACACACTGCAGCTACAGaTGAAGTCAACGGAAGTGGAGCAGGGCCTTTTCACGGACACCTACTGCAAAGTGTGCAGTGCACAACTCATCTCCGAGTCTCAGAGAGTGGCACACTACGAGAGTCGAAAACATGCGAACAAAGTGCGTCTGTACTACATGCTGCACCCGGTGGATGGAGGCTGCCCGGCCAAGAAACTACGGACACACAACGGCAGCGAGGAGGGAGACGTGGACAAGAATAAGTGTTGCACGTTGTGTAACATGTCCTTCACCTCAGCCGTGGTTGCGCAGTCGCACTATCAGGGCAAGATCCACGCTAAGAGACTCAAACTAGTGCTGGGAGAGCAGCCTGGCATCACAGGAaaagAGGTGGCACCCAGTCCAGTTAAAATGCCATCTGAAAGCTGGCCACAGCTGAATGGGGATTCAGATCGCTACTGCCAGCTGTGCCACGCGTGGTTCAACAACCCGGGCATGGCGCGACAACACTATGATGGCAAGAAGCACAAGAAGAACGCAGCACGTGCCGACCTGCTGGAGCAGTTGGGCAAGACACTGGACATGGGTGAAATGAAAGGTCTGAAGCGCAGCTACACTTGCGATGTGTGCAGCGTGACGCTCAACTCGGTGGCACAATACCACGCACACCTGCAGGGCTCCAAACACCAAAACAActTAAAGAATCAGTTATGTGTCCAGTAAAGCCGTACAGGAAGCTAACTGTCAGATTGATTGATGTCACACGGGCTTTGATCGGCTCGCCCTGAAATCTCTGCCTCTTCCCtcttgtctgtttctttctccatttctgcATCTTGTTGTCATCATCTGTCTATCTCAACCAGGAAGaccaaacaaattttttttaaactttcatttaAGTCCACTTCTGATGTCATACTATACGTTCCATTGTCCTGACTTTGAAGATGCATAGACTGCATTGTTCACATCATGTTTGTGGGATTAGTTACAGCTCAGTTGGAATCGTATCTTCTGTCTCGTCTTTATGTTTGTGGGTTGAACGACTTCAACTTGCATTCGTTCTGTCAGCCAGGTGTTGCGTGCATGAGtgatttattctatttttttttttttcgattttCAACCCAGCTAAGCAATATGTATGGAAAATCTGCCAAATGTATTATTGATTAAATGGATTCTGATTTAATAGCaacactgaaagagaaaaatgacaaatagtACTTTAAAGTTGGATGTATGTGCATCTCACATTCTACAACaagggcattgtgggtaatctGATAGGAGATATGGCCATATCATCAGGGTTTGAAATACAAAGATCTCACCAGGTTTAAAGGGTTTAAATTGACTAGTGCAACAGCTCGTTTGCACAATGTTCCTCCTTTTACCCAAAATATAGTGGATCAACCAAGACATTTGGTGTCAGatgtttgcttttttagttTCGCCCTGGAGCTGCGAGGCTAACGAGTACGAAAAACCTCAAGCCTCCTGTTTAGCTTCATTTATCTGCATGCCTAAGCAAAGTTCAGACACCAAAACCTGTTAATCAACTGTATTTGGGCTAATGAGGAAACTTGTGTAAATTTTGAGATTCAGTCTAGTTTTAAAAGTATTGTGACTATGTgttctttttaatattacaaaaaaaaaaaagttcgtTTTCTTTTACCGTATATGGCATATGCTACATTTTTAAGTGTGACTACTAAATTCTTATAGGTATCAATATTAGGGAGAATTACTCTAAGAACTGCATtgtcattttataatgaatgaattagattatttattattagaaaaatagcatttattttttattgtcattaatGACTTACTGTGTATGTTTGAAAGTCATTTTATGTTGGTTATGTGTCTGgatatttgttcttttttttaatctgacatttattttactataaacaATGGATGCATTATATAATATTGAGAGTGATTTgagtttttaaaggaaaagttcagaaaaaaaatgacattgtaaAGCTATGGAATCTAATTTGTGCAGTAGTATGGAGAGTCTGAATCTACcaaataatataatgtgataAAGTATTAGCACATTAGTACAGACTAAGGatttttgcactggagctaagaggctaatgtagctagtcCAAGAACATCTGTAAATTCACAAATGACATTGTGAAGCTTTGAAATCCAGCTTTCCAGTATAATTCGAAACTATGGTACACTTTTGGTCTAGCATGGAATTGTGCTAAGGAGAAACGTGAATctggttgtccaagatggctgcacATTCACACTACACAATGAAGTTTGGTTTATGTTTATAGATGTTTGTATACAGGAAGTCTCACTGTGTcaaaaagattttgggtgagactTCCATTACATTTGCATAAAGCTCCAGTGGAAAACCAAAAAAGTGAACACCAAACATGACATGGCTGATTAATTACAAGCTGTAAGGGAAACTGTGTAAATTTGATTGTTTACTGAACTATTCTTTTAAGATGATTCATCTCCTTAACGCtagaaaaaattttaataacatttgatATTAACGATGCCGATTCTGTGCACGAACAAGTCAGCATAAATGTTCTCAAAGTTTGAGTAATTCGGTTTGCTCATTGTTGCACTGAAGCTGTGTGTGAATGGTAGCGTGTTCCCTTATAGAGAGCAAGCTTCAGTTCTGCCTGAACACACTCCCTCCTTGTGCTATGGATCATGCGATCAGCtgtaaatattgaataaaagaCGCTTGCAGCCCTCTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412758 lncRNA downstream 7211 2549097 ~ 2594323 (-) True G348296
TU412773 lncRNA downstream 52524 2548123 ~ 2549010 (-) True G348311
TU412772 lncRNA downstream 53494 2546572 ~ 2548040 (-) True G348310
TU412771 lncRNA downstream 55019 2545415 ~ 2546515 (-) True G348309
TU412742 lncRNA downstream 177203 2423715 ~ 2424331 (-) True G348283
TU412967 lncRNA upstream 109240 2773722 ~ 2801204 (-) False LOC113542231
TU412963 lncRNA upstream 115355 2779837 ~ 2831679 (-) True LOC113542231
TU413141 lncRNA upstream 485519 3150001 ~ 3150416 (-) True G348640
TU413168 lncRNA upstream 534200 3198682 ~ 3198896 (-) True G348661
TU413170 lncRNA upstream 539609 3204091 ~ 3205284 (-) True G348663
XM_026940065.2 mRNA downstream 119351 2465572 ~ 2482183 (-) True LOC113542490
XM_026940243.2 mRNA downstream 143129 2435324 ~ 2458405 (-) True LOC113542614
XM_026940273.2 mRNA downstream 238379 2357271 ~ 2363155 (-) True ogfod2
XM_034299099.1 mRNA downstream 318541 2252981 ~ 2282993 (-) False tacr1a
XM_026939880.2 mRNA downstream 318542 2252981 ~ 2282992 (-) True tacr1a
XM_026939548.2 mRNA upstream 36515 2700997 ~ 2712386 (-) True sfrp1a
XM_034299212.1 mRNA upstream 81665 2746147 ~ 2773403 (-) True loxl2b
XM_026939603.2 mRNA upstream 116505 2780987 ~ 2782082 (-) False LOC113542231
XM_026939605.1 mRNA upstream 120079 2784561 ~ 2785074 (-) True zgc:153409
XM_026939604.2 mRNA upstream 120957 2785439 ~ 2785937 (-) True LOC113542232
TU412645 other downstream 369967 2179543 ~ 2231567 (-) False LOC113542580
TU412644 other downstream 415590 2179543 ~ 2185944 (-) False LOC113542580
TU412577 other downstream 603064 1995902 ~ 1998470 (-) True G348145
TU412500 other downstream 772889 1827898 ~ 1828645 (-) True G348096
trnak-uuu_19 other downstream 1002992 1598470 ~ 1598542 (-) True trnak-uuu_19
TU412979 other upstream 120195 2784677 ~ 2785896 (-) True G348491
XR_004577129.1 other upstream 150376 2814858 ~ 2964889 (-) False unc5db
XR_003404311.2 other upstream 491560 3156042 ~ 3166254 (-) False tm2d2
XR_004577114.1 other upstream 681673 3346155 ~ 3387730 (-) False trpm3
TU414275 other upstream 1874801 4539283 ~ 4539831 (-) True G349584

Expression Profile