RNA id: TU413193


Basic Information

Item Value
RNA id TU413193
length 1461
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G348678
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 3256110 ~ 3259052 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTACAAAGTGTAATATTACAATGTACAATACTGTAGCATTCATCAGTGTTGACTGAGACAGTAGCACAGTGACATTAGtgcattaaaattattattattcatcataATATCATCATATTACTGTCAAAAGTAATGAAAAGAATTAACACTGTTTCATCCACTTGTTTAATACAAATTTTCACAtttgcaaataataaaatggcTGTTGGCTGAGGTGCAAAAATGATGATTGgaataattttgaaataaatgttggcacagtgagtgtgttacagtctcTACCTGAGCTAGTGCAGCATCTTTTAAAGGCACACACTGGCTTCATTAGTACTGACCTACGTAACCGtgctttaacattaacactgggGTTTCATTTCCTGACAGATGTGAGGTAGGCGTTCCAGAACAAGGCGATCAGGTTGGCAAACAGCACCcgaaactgcaaaaaaaaaaaaaaagtgtagtcATAACTACAGTGCTCTTGCTGCCATGGTTAACCattttcttgttaaaaaaaaaagaacttccCATCTACACGCCTCTCCTCGCTTTGTGCTGCAAGTGTCTACATGTTACGTAGTTTAGTTTTACGCACTTCTACCACGAGAACTTGTCATTGCCACATTAAAACAGAACGCAGGAATCAAATCAGACATGAGCTGAATTCTTATTTAGAGCCTTAGATATCCAGAATAAGCCCAAAACGGAGGGAAtattactgaaataataataataactttacaATAATGATGTTTGTTATGTAATTTTGCTGTAGTAATTATGACTGATTTGACATATTTCTAtacattactacacacacctcatatcTTTCATGCAAACTGACTGATACCTTTAACCTCTTGTTGCAGGGCTTGTGGAGCATCTGATCATTAGTAGATCACATGACCATAGCACCTATATAGGCTTTACCTGTGCTAGCAGCTCCAAAAGTTACCTAAACCCCCAGAtcaGGTGTGCAGATGTTCCTCTTAAAGTTGATGATGAGTGTAATTGGGTGCTACTTCATTCACCACACAGTGTTACGCTGTAGTATTCTATGGTAACATCATTAAGGATTCCATCTTTATTGAGTATATAAGTAAGCTGTATATACAGAAACACAGATACTACATTTCTGATATTATTGAATTTTGTCCAATCAGACTCAGGTGTCAATGTTTCATAGATCAGGACAGAGTGAAATCCTGAAACGTCTACTGAGATGCCTGGGACAAGGTGTGTCTACCTCCAAAGCGTTCATCACCacaaagaagaggaggaggaaagcgGGGGCGAAGACGAGTCGCTCCAGGAGGAGGCGTTTCAACATGGAGAACGGAGCCGAGGCTGGAAAAAGCAGCTCCAGCAGCTGGTAGAAGTAATGACTCAGTGGACCTGTGATGACAAGCCTGAAAACATCAAATCACGCTATTAAATACTGACACAGGAAATGATCTGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU413177 lncRNA downstream 32611 3223300 ~ 3223499 (-) True G348669
TU413169 lncRNA downstream 48276 3205505 ~ 3207834 (-) True G348662
TU413170 lncRNA downstream 50826 3204091 ~ 3205284 (-) True G348663
TU413171 lncRNA downstream 50826 3204091 ~ 3205284 (-) False G348663
TU413168 lncRNA downstream 57214 3198682 ~ 3198896 (-) True G348661
TU413196 lncRNA upstream 3217 3262269 ~ 3264822 (-) True G348681
TU413212 lncRNA upstream 56322 3315374 ~ 3315944 (-) True G348695
TU413444 lncRNA upstream 291525 3550577 ~ 3551672 (-) True G348906
TU413450 lncRNA upstream 302614 3561666 ~ 3607376 (-) False LOC117595903
TU413448 lncRNA upstream 337741 3596793 ~ 3607376 (-) True LOC117595903
XM_026939936.2 mRNA downstream 13269 3229104 ~ 3242841 (-) False araf
XM_034299002.1 mRNA downstream 13346 3229104 ~ 3242764 (-) False araf
XM_034299003.1 mRNA downstream 13519 3229104 ~ 3242591 (-) True araf
XM_034299142.1 mRNA downstream 56052 3168278 ~ 3200058 (-) False tbx3b
XM_034299141.1 mRNA downstream 56052 3168278 ~ 3200058 (-) False tbx3b
XM_034299051.1 mRNA upstream 48116 3307168 ~ 3312856 (-) False klf9
XM_026939927.2 mRNA upstream 48116 3307168 ~ 3312856 (-) True klf9
XM_034299101.1 mRNA upstream 60733 3319785 ~ 3387730 (-) False trpm3
XM_034299100.1 mRNA upstream 60733 3319785 ~ 3387730 (-) True trpm3
XM_034299102.1 mRNA upstream 60733 3319785 ~ 3361403 (-) False trpm3
XR_003404311.2 other downstream 89856 3156042 ~ 3166254 (-) False tm2d2
XR_004577129.1 other downstream 291221 2814858 ~ 2964889 (-) False unc5db
TU412979 other downstream 470214 2784677 ~ 2785896 (-) True G348491
TU412757 other downstream 591735 2637755 ~ 2664375 (-) False zmat4a
TU412645 other downstream 1024543 2179543 ~ 2231567 (-) False LOC113542580
XR_004577114.1 other upstream 87103 3346155 ~ 3387730 (-) False trpm3
TU414275 other upstream 1280231 4539283 ~ 4539831 (-) True G349584
TU414706 other upstream 2062461 5321513 ~ 5364282 (-) True G349951
TU414705 other upstream 2103230 5362282 ~ 5367010 (-) False LOC113542328
XR_004577106.1 other upstream 2317568 5576620 ~ 5578981 (-) False LOC117595919

Expression Profile