RNA id: TU413196


Basic Information

Item Value
RNA id TU413196
length 1863
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G348681
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 3262269 ~ 3264822 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtggtagtagtggcAATATTACTAGTAATACTAGTattagtagtggtagtaatagtataGGTTCATGAGATTTGCTCGGTCACCTGGTCGATCCAGCTGTTGTAGGCTGACACGCGGGTGAAGACGGTGGGTTTCTTCTCATAGTTGCAGCCGAGGCCTGAGACGAAGCTGGCGATGCCGTGCACTTCCCACACACCCTGTGCGTTCTTACAGTTGAGAGGACCACCAGAGTCACGTTGCAGCCAGCGACGATGCCATCACCACCGGCGCACAGCAGAGTGTCTCTCAGCAAAGAACCCCACCAGTCGGGTTTGGAGCAGGTGGCATGGTCAACGACGGGCATCAGAGCCTGCTGCAGCTTATCAGCGATGGGGCCTCCAGCTGGAACACACCACAACTCAGTCTGAACACTCGAATTCATAATGCTTAACGATTCCTAAGGctttctagaaataaagagTCGGCAAGAAATTACCCATTGGGGTAGATAAACCAGTGAAAGAACAAGACAAGTAGTTTTGCTGGTTTTATGGGGTCAGAATGGGTTTTTACGTTATTGCCCCCAAGTAGAATCGTTAATGCAACAATTAATTGCAACAATTCTGACACAACATGAGTCCATGACTAAACACTGCACAtttagcaacacacacacaaacacttactGGAGGTTCTGCCCCAGCCGGTGATGTAGCAGGGGTAGTTGTTGGGGAGGATGGtaccaggaggaggcaagcagCCCAACTGCACGCTGTTGCTCAGGGTCACGTGTTCAGTGAGTTTAATCAGAGCAATGTCATTCCTGAATTCACAATCACATAGATTGAGCATGAGAGTCACATCTTCGTGTACCTctggtttttagactgatggtactcttagtccctgacatAGTGACCAGCATGAGGATACGAGACTTCTTCTCACCCAAGAGCTACAAAGACCGGGTTCCACTTCTCATGAACGATGATCTTCTCAGGAGTCAAGGCTTGGGATCCAGGCTCCTGTTCCACCAGGTTGTATTTTCCCACATACACACGGTAGGTGTTCTGTTGGCTGCGAGACAGGAGGGCAAAACATTTAACATACCCAACTTGGTAGCTGTGCTGTCTTACAGAATCGCACTATACATAAGCTCACTTGTTGTCAGCGTGTCTTttaggttatttatttttttttcagaacaaaCCAAACGTAGACCATCATACTTGATACAATGAGCAGCAGTCATCACCCAGTTGGTGGCGATCAGCGATCCTCCGCAAGTGTGTCTCCACTCAGCATCTCGCAGGTACTGCAGAGAGATCTGTAGGGAAAAATGTTTGTAGATCCAGTCACAAAGAACaagggaaagacagagaaatgcagagaaaggaaaggaggaTTACCTGCCAGGGCCAGCTGTGAGGAATGGCGTCCACTCCATTGACCACGCGGGTGGTGAGGGGCTGGATGGGGGGAACGCCACACCCCAAAGCTAAAGCATCAACACAGTAATCAGTCATTTCTTTAATAATGTCACAGTGTGTTCCATCAGTTTCTCTCTATCACTAAAGTGTAAGATTAAAACGACACAAAGGGGTGGTGTTGGATTGTCTCGCGACATTTATATGAACTCCAACTGATGTTGCAAATTTGCTGCGAGATCTAGTTGTACAATTTCCCTATAATTTATATTGTTAACGTAAAGCAAAAAAATCCATGATGCAGCTGTCCAGATGTTGAGACTGCTTACCGCCAGCGATGAGCACCGATGCCAAAACGAATGGGAGCATGCTGACTTGATTTTGCTGACACTTACACGTCGAGTCGAATTATAAATCCTTCCTCTCGCAATAAAGCTACACCCCGTTtataaaaaag

Function

GO:

id name namespace
GO:0052689 carboxylic ester hydrolase activity molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function
GO:0017171 serine hydrolase activity molecular_function

KEGG:

id description
ko00591 Linoleic acid metabolism
ko00592 alpha-Linolenic acid metabolism
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko04975 Fat digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU413193 lncRNA downstream 3217 3256110 ~ 3259052 (-) True G348678
TU413177 lncRNA downstream 38770 3223300 ~ 3223499 (-) True G348669
TU413169 lncRNA downstream 54435 3205505 ~ 3207834 (-) True G348662
TU413170 lncRNA downstream 56985 3204091 ~ 3205284 (-) True G348663
TU413171 lncRNA downstream 56985 3204091 ~ 3205284 (-) False G348663
TU413212 lncRNA upstream 50552 3315374 ~ 3315944 (-) True G348695
TU413444 lncRNA upstream 285755 3550577 ~ 3551672 (-) True G348906
TU413450 lncRNA upstream 296844 3561666 ~ 3607376 (-) False LOC117595903
TU413448 lncRNA upstream 331971 3596793 ~ 3607376 (-) True LOC117595903
XR_004577093.1 lncRNA upstream 334837 3599659 ~ 3607371 (-) False LOC117595903
XM_026939936.2 mRNA downstream 19428 3229104 ~ 3242841 (-) False araf
XM_034299002.1 mRNA downstream 19505 3229104 ~ 3242764 (-) False araf
XM_034299003.1 mRNA downstream 19678 3229104 ~ 3242591 (-) True araf
XM_034299141.1 mRNA downstream 62211 3168278 ~ 3200058 (-) False tbx3b
XM_034299051.1 mRNA upstream 42346 3307168 ~ 3312856 (-) False klf9
XM_026939927.2 mRNA upstream 42346 3307168 ~ 3312856 (-) True klf9
XM_034299101.1 mRNA upstream 54963 3319785 ~ 3387730 (-) False trpm3
XM_034299100.1 mRNA upstream 54963 3319785 ~ 3387730 (-) True trpm3
XM_034299102.1 mRNA upstream 54963 3319785 ~ 3361403 (-) False trpm3
XR_003404311.2 other downstream 96015 3156042 ~ 3166254 (-) False tm2d2
XR_004577129.1 other downstream 297380 2814858 ~ 2964889 (-) False unc5db
TU412979 other downstream 476373 2784677 ~ 2785896 (-) True G348491
TU412757 other downstream 597894 2637755 ~ 2664375 (-) False zmat4a
TU412645 other downstream 1030702 2179543 ~ 2231567 (-) False LOC113542580
XR_004577114.1 other upstream 81333 3346155 ~ 3387730 (-) False trpm3
TU414275 other upstream 1274461 4539283 ~ 4539831 (-) True G349584
TU414706 other upstream 2056691 5321513 ~ 5364282 (-) True G349951
TU414705 other upstream 2097460 5362282 ~ 5367010 (-) False LOC113542328
XR_004577106.1 other upstream 2311798 5576620 ~ 5578981 (-) False LOC117595919

Expression Profile