Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU413444 |
| length | 1060 |
| lncRNA type | inter_gene |
| GC content | 0.44 |
| exon number | 2 |
| gene id | G348906 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047618.1 |
| NCBI id | CM018564.1 |
| chromosome length | 20251756 |
| location | 3550577 ~ 3551672 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU413212 | lncRNA | downstream | 234633 | 3315374 ~ 3315944 (-) | True | G348695 |
| TU413196 | lncRNA | downstream | 285755 | 3262269 ~ 3264822 (-) | True | G348681 |
| TU413193 | lncRNA | downstream | 291525 | 3256110 ~ 3259052 (-) | True | G348678 |
| TU413177 | lncRNA | downstream | 327078 | 3223300 ~ 3223499 (-) | True | G348669 |
| TU413169 | lncRNA | downstream | 342743 | 3205505 ~ 3207834 (-) | True | G348662 |
| TU413450 | lncRNA | upstream | 9994 | 3561666 ~ 3607376 (-) | False | LOC117595903 |
| TU413448 | lncRNA | upstream | 45121 | 3596793 ~ 3607376 (-) | True | LOC117595903 |
| XR_004577093.1 | lncRNA | upstream | 47987 | 3599659 ~ 3607371 (-) | False | LOC117595903 |
| TU413447 | lncRNA | upstream | 63399 | 3615071 ~ 3616581 (-) | True | G348909 |
| XR_004577092.1 | lncRNA | upstream | 130908 | 3682580 ~ 3685306 (-) | True | LOC117595902 |
| XM_026939819.2 | mRNA | downstream | 4097 | 3511115 ~ 3546480 (-) | False | cemip2 |
| XM_026939818.2 | mRNA | downstream | 4876 | 3511115 ~ 3545701 (-) | True | cemip2 |
| XM_034299101.1 | mRNA | downstream | 162847 | 3319785 ~ 3387730 (-) | False | trpm3 |
| XM_034299100.1 | mRNA | downstream | 162847 | 3319785 ~ 3387730 (-) | True | trpm3 |
| XM_034299102.1 | mRNA | downstream | 189174 | 3319785 ~ 3361403 (-) | False | trpm3 |
| XM_026940108.2 | mRNA | upstream | 847 | 3552519 ~ 3568775 (-) | True | abhd17b |
| XM_034299360.1 | mRNA | upstream | 113300 | 3664972 ~ 3673856 (-) | True | LOC113542282 |
| XM_026939625.2 | mRNA | upstream | 282527 | 3834199 ~ 3879944 (-) | False | trpm6 |
| XM_034298881.1 | mRNA | upstream | 282527 | 3834199 ~ 3879944 (-) | True | trpm6 |
| XM_026939627.2 | mRNA | upstream | 292810 | 3844482 ~ 3879947 (-) | False | trpm6 |
| XR_004577114.1 | other | downstream | 162847 | 3346155 ~ 3387730 (-) | False | trpm3 |
| XR_003404311.2 | other | downstream | 384323 | 3156042 ~ 3166254 (-) | False | tm2d2 |
| XR_004577129.1 | other | downstream | 585688 | 2814858 ~ 2964889 (-) | False | unc5db |
| TU412979 | other | downstream | 764681 | 2784677 ~ 2785896 (-) | True | G348491 |
| TU412757 | other | downstream | 886202 | 2637755 ~ 2664375 (-) | False | zmat4a |
| TU414275 | other | upstream | 987611 | 4539283 ~ 4539831 (-) | True | G349584 |
| TU414706 | other | upstream | 1769841 | 5321513 ~ 5364282 (-) | True | G349951 |
| TU414705 | other | upstream | 1810610 | 5362282 ~ 5367010 (-) | False | LOC113542328 |
| XR_004577106.1 | other | upstream | 2024948 | 5576620 ~ 5578981 (-) | False | LOC117595919 |
| XR_004577154.1 | other | upstream | 2505309 | 6056981 ~ 6120959 (-) | True | pappab |
