RNA id: TU414009


Basic Information

Item Value
RNA id TU414009
length 2122
lncRNA type sense_over
GC content 0.34
exon number 1
gene id trpm6
representative False

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 3832085 ~ 3879948 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCATAAAATTGTCTTTAATTCTTTCCCCCACAAAGAAATGTCTACAAAAGCGATAAAATATCCTTTAACAAAAGTCCTTTGCCTGCTATGTACAACTCAGAGGAGACAATTCAAGAGTTTGACTACATTTTCACACACCTTATTCCACAAAGCTGTGGTTTAACcccataaaacacacaatcagTCATTTTGCACTCAAGTGCTCCACACGTCTTATTTTAAACTTCATGCGTAcaggggaaacacacacacactcacacacacacacacacacacacacttggcaaGTTACCCTGTTCTTCCTGCCCTCACCCGTCCCTctgtttttgcagcattgtgtcATCAAGGACGCGTCATTATAAATGACaaactttgttttcttttgaattCCCCGTTTTGATTGGTTCACAAGTAAACGATGCATTCTTTATATTTACTCCGTAAGCGCCATTTAGCTTCATTGCACTCCAGCTATGGcacttcagagaaaaaaaaaacccttccttTACTGTTCAGTCCAGTGAGCAGCACTTTCTAATTCATAAATTGATAATTGattgtaaaacaaacacaaaataaatgttttcttatgctgtttttttgttgttgagaATAACAGGGTTTTCACTTCCAGAGGTATACAGACATATACATGTAATATATTTCTTCATGTTGGGCTACTGTAGTGTGTAGGTACAGGATAAAGAAAGCTTGCATCGTTGGACAAATTTGTAAGTAGTTATGAGcaaatatcacattaaaagGTGATTGAAACAGtgatcttaataaaaaaaaaacaaaaaaaacacaacaatcgCTTGGATTTGTGCTGAAACAGACCCGAGTAGGTTCCAAAAGTCTACGTCCAAGAACTGTTTAtatttcaaatacattattaaatgaataattattattcaagaatacattatttaaacttGAGGAAGATTAAGCATTTAGAAACCCGTCAAGTTTAAGTTATTGTGACACTGTGTTATGCGATTCATATGATGTGAAtggaaaataattcaaataaatgataaaagaacATGATTTTTCTGTTAGGTTATCAATACTGGTCCATCCAAAGTGCAATCATTGGTCGGTTAGTAATCAAATTAACGTGCTACAGAGACCTAAAATATGTCAAACTCATTATTTAAGCAAAGCTCAATTATGAGAACATActaatgtcagtgtcagtggAATAACAGGTAATTGTATAGTGTacgtatggaataaaacatgacagctgtgctgttataggaaaataatccctgactgtgttttattccttttacaccacagcaatttgctaatcatttttaattgattaaagaacgagttatgtttaatgtttgggAACGTTCCTGTTATGGCTGTTACAGTTGTATTTTATAgctgactttctctctctctctctctcttgctttctctctcactctctctcttgctctcgaatggaataatatttaaaaaaatgcagctttaaagTTACAGCGTTATCTCTGACTTATACAAAGCActaaaactggagactccttctacaTACGCTAAACGTAAAATGTCCaacatacaagtccatgtgcaGCCGGGACTACTGTaatagctgctgttatagaaaattaatcaacacccgctgaccaatcacaatgaAGAATTCAACAACGCTGCGGTATAAATTTCTATAAACATTAAGGTTAGTAAAGATTCTCACCCATTTTAAGACAAGAACAGGGACAAAAGTATTGCtgccttgttaaaaaaaaattaacaactgATGCTAACTGATAATAACAACTGACTCTATTAGTAAGAAAAATGATGGCTATACTGAATATTCAGACAGCCTGACTTTGTTCACTTAACTATGATAAAACAGAAACAGTTCTTGGTAGCACGCTATGACTTTTGGTTCCTGTTGTAcactacatttcattttaattgttaaaaattaTGTATAAGTATTGAAAATACTGCCTCGTTTGAGGCAGTTCAAGTCCTTCATAAAACTATTTACGTGCCTGTTATGCTCTTTAGTTCAcatgaaaatgtatatatgtgtgtgacagTAGTCTGAGCAGGGTAACGTATTCAATCTTACTATATAACATTCACAACAaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU413957 lncRNA downstream 110066 3718239 ~ 3722019 (-) True G349333
TU413943 lncRNA downstream 134561 3695478 ~ 3697524 (-) True G349325
XR_004577092.1 lncRNA downstream 146779 3682580 ~ 3685306 (-) True LOC117595902
TU413447 lncRNA downstream 215504 3615071 ~ 3616581 (-) True G348909
TU413448 lncRNA downstream 224709 3596793 ~ 3607376 (-) True LOC117595903
TU414019 lncRNA upstream 47810 3882016 ~ 4204104 (-) False carnmt1
TU414221 lncRNA upstream 629968 4464174 ~ 4512012 (-) True G349547
TU414369 lncRNA upstream 869187 4703393 ~ 4704166 (-) True G349655
TU414350 lncRNA upstream 942824 4777030 ~ 4786024 (-) True G349642
TU414540 lncRNA upstream 1172070 5006276 ~ 5006649 (-) True G349805
XM_034299360.1 mRNA downstream 158229 3664972 ~ 3673856 (-) True LOC113542282
XM_026940108.2 mRNA downstream 263310 3552519 ~ 3568775 (-) True abhd17b
XM_026939819.2 mRNA downstream 285605 3511115 ~ 3546480 (-) False cemip2
XM_026939818.2 mRNA downstream 286384 3511115 ~ 3545701 (-) True cemip2
XM_034299103.1 mRNA downstream 475084 3319785 ~ 3357001 (-) False trpm3
XM_026939627.2 mRNA upstream 10276 3844482 ~ 3879947 (-) False trpm6
XM_026939629.2 mRNA upstream 12296 3846502 ~ 3879946 (-) False trpm6
XM_026939630.2 mRNA upstream 19059 3853265 ~ 3879948 (-) False trpm6
XM_026939631.2 mRNA upstream 40676 3874882 ~ 3879761 (-) True wu:fa19b12
XM_026940237.2 mRNA upstream 47850 3882056 ~ 3889768 (-) True carnmt1
XR_004577114.1 other downstream 444355 3346155 ~ 3387730 (-) False trpm3
XR_003404311.2 other downstream 665831 3156042 ~ 3166254 (-) False tm2d2
XR_004577129.1 other downstream 867196 2814858 ~ 2964889 (-) False unc5db
TU412979 other downstream 1046189 2784677 ~ 2785896 (-) True G348491
TU412757 other downstream 1167710 2637755 ~ 2664375 (-) False zmat4a
TU414275 other upstream 705077 4539283 ~ 4539831 (-) True G349584
TU414706 other upstream 1487307 5321513 ~ 5364282 (-) True G349951
TU414705 other upstream 1528076 5362282 ~ 5367010 (-) False LOC113542328
XR_004577106.1 other upstream 1742414 5576620 ~ 5578981 (-) False LOC117595919
XR_004577154.1 other upstream 2222775 6056981 ~ 6120959 (-) True pappab

Expression Profile