RNA id: XM_026939630.2


Basic Information

Item Value
RNA id XM_026939630.2
length 4688
RNA type mRNA
GC content 0.47
exon number 18
gene id trpm6
representative False

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 3832085 ~ 3879948 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttgttgttgttgttgttgttgttgtttggtcTGCCGGACACACGGGGGCGCTGTGCTCAGTTCTAACGTGTAATTTGCGTCTGTATGAGTTGACGTGAAGTTGCAGTCTCTTCATGTTTTCCGgaatttctttaatttaacGCAACAAGTAGGAAGTGTAGAACTTTCCGGAGACCTCCTGCGCACGATGAGAAAGCGCAGAGCCGAGAGCTCGTCACTTCACGAGGTTCCTCAGAAGAAGAAAtgtcgctgtgtgtgtgatgcagagCCCGAGCTGGAGGCAGTGCACGCGCTGCACGCCGCTCCGCGTGCGCTCTTCACCACTGTAATCGGAGAGCATCGCAGAAAGAGACCGAGATGCTGCGAGGATCCTGAACAGCACGGCAGAACAGGGGCACCGGGGCACAGACTGAGTAACGCTACAGACGGCGTGAATGAGGAGACCGGGGATGTGCGCGTTTCTGGAAAGTTCCGAGGCGCGAGCGGTGCGTGCATGTGCGAGATGGCGTCAGAAGGAAGCGCGAGCGGGACAAAACCGGAAAAGCGTACGAAGGTGATGCTTCCTGATGACGAGGACGAGCTTTGTGCATTTAACTCCTTCCAGTTCTGGAGAACTCCCCTGCCGGCGTTAGATCTGTCGCTCCTGGACAGTCCGTCAACAACCGAGCTCAAAGAGGACAGGTCTGTCAAAGACGGCACAGAAGAAATGGAGACATGATGCAGCAATATGTCACTCCATGATACGTTATAAACTCTGTGGTGCAAGGTCAACTTGCAAGTATTTGGATTTAAGAAAGGATGAGCTCCAGGAATCGACAatgtaaagggaaaaaaactagAAAGAATACCAATACCACATGCCAGTTCTGCTTTCAAACTGCTTTATGTTGTTTAAAGAAGAAGTCATACTGCCActtgttttttccctccttcaTGAATAATGTGTATTTCTAAGCTGTTGGTAGGACTTTACAATGCCTAATTTACGGTCATATGATTAGAGTCATTGTTAAAGCACAAACCTGGTTACTTAATGTTTGTTGATGGGACAATGTGCTGCTGtttcagtatttctgttttgttcagAATGCATTTCGCTTAATCTTCACTCTATGGTTATGAGCAGAAGATCGTGAATTCAAATTCCAGGACTGCCAGAGAACCTCTCTTGGATTTTCATATAGTAaccttcaagaaaaaaaaaagtttggtgaAACCTTTCATTAATTAAGcaattatcctggtcagggtcacggtggatccggagtacACCTTGGACGGGGCACCTGGTCCTTTTCAGggcactgtgaacacacacagtcacacactcactcacacctaggggcaattcatCTTAGCCAGTCCATCTACAGGCATGGTTTTTGGGAGATGTGAGGAAAGTGGAGAACCTGAAGcgaacccacacagacatgcagaattccacacagacagtaacccgagctcatgATTgaaccctggagttgtgaggtgCTGCCCTTGCTGAAGCCAAATGTATACAATTCtattatttgttagctacattagcattgtAACTCAACTAAAGTCTGCTTTACAGGTTTCGATTTTTTTCCAGCCTGATTTTGCTATTGGAGGCAAGAAAACATACATTGTAAAAGTATTTTTGACCGTAAATTGAAATCTGTAGTCTTACAACACAGCGTAAAATGCTGACTGGCCTGCGTAGTGGCATTGCGACTAAGGAGGACCAGCGTAAAGGAAACCAACCCATCTTGGGTGATCGACTACATTTGGGGTTTGGAGAagatttttactgtataaatatgaggtttgTGAATCCTGGCTGATAGAATTTCAGATTCCTgcaaattcctttttttctttataattgtGATATGTAACAGTTCAGTAGATATTGTACTACTTCTTGTATTAAaagtccatgttttttttttttttttttaaccttttatatGCTAAAGACTGACCATACTGATCTCGTGTGTCATTCGTCCTCTCGCTCTTAAAAGAAGTcatcaattttatatttttctcattCCATTTGGTCTGTCTACTgcagttgcaaaaaaaaaaaaaaaagtgaactttATTCCTATGTTGCTCTACTTTGTGTTTAAGctcatgccttttttttttttaaccttaaagAGGTCTCACAGTGATCATCGCTCAACGTCTCTCCACCATACAGAACTCTGACATCATAGCAATGATGTCATGAGGGTTTGTGATAGAGAAAGGCACACATGGTTAGCTCATGGCCTTAAATGGAGCTTATTACAAGCTGGTCATGACTGAAGCACTAATCATTCATTTGCTTACTATGGATCCAACTAATGTTGAATGATTCCCAAATAGTTATGTTAATTATGCATAAGATCTCTTTGCACCACTAAAGCCCTTTGTGTTTTGCTCACACTGCTGTTTATCACAAAAGGCAGTACTTtcgaaatgaaataaaataactttgaGACTGCCACCGTGTTGGGTCAACCTCCAAAGACCTTTGATCCGTGCAAAGGAGGAAAACGAAGTGTGAGATTTTCTggggtactttttttttttttccctttatgagTCACAGCTAGTGATAAACCAGGCATGGAGACCACCGCGCCTTCTTAGCAAACCTGCTTAGCAAATCATGTCTAATATGACATAGCAGTAAAACACAGCTTTAGGATCACCTCAGCACACACTCCAGAGTGTCCAGTTCCTTCAGAGCTTCAGAGCCACGCCCACTTTCTTTCCTGCTCTTCTCAGCGCGAGCGCCGTGGTCGCGTGAAGAATGATGACTGACTGAACACGCGCGCACACAATCAGGATGGAGTCTGGAAAGTCGTGGATCCAGACGACCTTTTATAAGAGGGAGTGTGTGAAGTTTTTACCAGCGTCTAGGGACCACCACAGgtGTTTCCCTGTTTGCCATGTTTGCCAAAACCTAGTCAGATGTTGCTGTGGGAGGCTAATCGGCGAGCATTCAGAGCTCGACTCCAGTTCTTGGCTCCCTCCCTCTGGGGAAGAAGAGGTGTGGTGTGTTGTTCAGCACACCAAAACCAGCCCCACTGATGCATTTGGCTCTATCGACTTCCAGGGCAGCAACAAGTGTTCCTGCCGTGCTAAGtaTGTGCGTTTGTCCTGCGATGCTAAACCCGAGGAACTTCGCTGTTTAATGCTGCGAGAGTGGAACATGGCTCAGCCCAAGCTGCTCATATCAGTGCATGGAGGAACAGACAACTTTTCCTTACCCCCGAGAGTGGGCCAGGCGTTCAGCAAGGGCCTCATCAGGGCTGCCGAGACTGCAGGGGCCTGGATTTTCACTGATGGCTTCAATACAgGGGTATCAATGTATGTTGGAGATGCTGTGAAAGTCTATGGTACGCACGAACGCAGGAAGAGAGCTGTGATTGGTATCACGCCATGGGGGCTTATTGAGAACCATACTGACCTCATAGGACGAGACGTCCTGAGGCACTACCAGACTCTGGGGAATCCACTGAGTAAGCGCTCCAGTCTTAATCCCCTGCACTCGCACTTCCTGTTAGTGGATGATGGAAGTCTAGGTAAATCTGGAGGCCAGCAAGAGCTGAGGAGAAAGTTGGAGAGGCATATCCACCGGCAGAGGATCCAccccagactggGTCAGAGAGTTCccctggtgtgtgtggtggttgAGGGGGGTCCTGCAGTGCTCTCCACCGTGCTGGAGTATGTGAGCAGGTCTCCTCCTGTGCCCGTCATTGTGTTTGAGGGCACCGGCCGCGCCGCAGACCTGCTGTCTCTCATCCACAAACAGACAGCAGCGGACAGGGAGCTGGATGTGAATATAAAGGAGGATTTCCTGCAGCGCATTGAGAATGTGTTTGGTGTTGTGAGAACGAAGGCTTATCAGCTCTTCGCTCTGCTTAAACATTGCATGGAGCACAGAGAAGCGatcACCATTTTTGACTCAGAATCAGAGGACCATTTGGAAGCAGATGTGGCTATTTTGACAGCTTCACTAAGAGGCACACCAGCAGACAAATTAAGCATTACACTGGCCTGGGACAGAGCTGACATTGCTCAGCAACATGTACTGGTATATGGACACCACTGGAAGGTGGGGGCCCTGGAGCACGCCATGCTGAACGCCTTGCTGATGGACCGGGTCAGTTTTGTGAAGCTGCTTATTGAGAATGGCGTGACCATGAAGCACTTCCTGACAGTGTCTCGCCTGGAGGAGCTCTATAACATGAAGCACCAGGGCTCCTCAGATCACTTCTTACGCCATATCATTGAGGATGCCAAACAGTGCCGCCTTCCTGGGAAATATAAGATCTCTCTGATCGATATTGGTATGGTCATTGAATATTTGATAGGAGGAGCTTATCGGAGCACATACAGGAGCAAGAGCTTCAAAGCTGTATATAACCGAATTCACAGTGAACCGAAGACAGTCGGGAGCATTCAGCATCCAGAAGGACTTGCACAGAGCCAGCTGATCAACCACAGCCTCAATTCTACAGAACTGCAGATCCTTACAGACGGAAGATGAAATCAGAATCTGTGCCTAATAACATGGAGGCAGTGGTGGCAGAGCTGGGCAGCTCGTCCCTGTTTGTCTACAGTTTCAATGACCTGTTTGTGTGGGCAGTATTGAAGCGGCGGCAGCAGTTGGCACTCTTCCTGTGGCAGCATGGCATGCAGGC

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0005216 ion channel activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU414009 lncRNA downstream 19059 3832085 ~ 3834206 (-) False trpm6
TU413957 lncRNA downstream 131246 3718239 ~ 3722019 (-) True G349333
TU413943 lncRNA downstream 155741 3695478 ~ 3697524 (-) True G349325
XR_004577092.1 lncRNA downstream 167959 3682580 ~ 3685306 (-) True LOC117595902
TU413447 lncRNA downstream 236684 3615071 ~ 3616581 (-) True G348909
TU414019 lncRNA upstream 2068 3882016 ~ 4204104 (-) False carnmt1
TU414221 lncRNA upstream 584226 4464174 ~ 4512012 (-) True G349547
TU414369 lncRNA upstream 823445 4703393 ~ 4704166 (-) True G349655
TU414350 lncRNA upstream 897082 4777030 ~ 4786024 (-) True G349642
TU414540 lncRNA upstream 1126328 5006276 ~ 5006649 (-) True G349805
XM_034299360.1 mRNA downstream 179409 3664972 ~ 3673856 (-) True LOC113542282
XM_026940108.2 mRNA downstream 284490 3552519 ~ 3568775 (-) True abhd17b
XM_026939819.2 mRNA downstream 306785 3511115 ~ 3546480 (-) False cemip2
XM_026939818.2 mRNA downstream 307564 3511115 ~ 3545701 (-) True cemip2
XM_034299103.1 mRNA downstream 496264 3319785 ~ 3357001 (-) False trpm3
XM_026940237.2 mRNA upstream 2108 3882056 ~ 3889768 (-) True carnmt1
XM_026940141.2 mRNA upstream 110959 3990907 ~ 3993684 (-) True LOC113542542
XM_026940140.2 mRNA upstream 113798 3993746 ~ 3997416 (-) True LOC113542541
XM_026939996.2 mRNA upstream 150485 4030433 ~ 4032187 (-) True LOC113542443
XM_026939800.2 mRNA upstream 184317 4064265 ~ 4084764 (-) True sart3
XR_004577114.1 other downstream 465535 3346155 ~ 3387730 (-) False trpm3
XR_003404311.2 other downstream 687011 3156042 ~ 3166254 (-) False tm2d2
XR_004577129.1 other downstream 888376 2814858 ~ 2964889 (-) False unc5db
TU412979 other downstream 1067369 2784677 ~ 2785896 (-) True G348491
TU412757 other downstream 1188890 2637755 ~ 2664375 (-) False zmat4a
TU414275 other upstream 659335 4539283 ~ 4539831 (-) True G349584
TU414706 other upstream 1441565 5321513 ~ 5364282 (-) True G349951
TU414705 other upstream 1482334 5362282 ~ 5367010 (-) False LOC113542328
XR_004577106.1 other upstream 1696672 5576620 ~ 5578981 (-) False LOC117595919
XR_004577154.1 other upstream 2177033 6056981 ~ 6120959 (-) True pappab

Expression Profile