RNA id: TU414546


Basic Information

Item Value
RNA id TU414546
length 999
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G349811
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 5115816 ~ 5126817 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cccagctttaacagactacataaggctactttacatctcctgtaaggacaatgacttttaagatggaTGCACCATAGGttggaaacttgttgcctcttttaatgcCATTCCGTATATgtatcatgcttatagccaccaagtcattatgatgctttttgatcgtttaacagggatcaaagtgtttgtgtgtatcaataacagcaggtatgtcatgtttggtatgtgtgtgatcactattgaatttcctaagggttggtataatgtaaagttgagtacaatgtattacatgcatgttatcAAATTCCTGACCTAAGTTGTAACTTAACCTaatgcaaagtttgcaaagcacataactcagagaccagaatgttaattagtgtcagaggaggagaatacagtttacaccctgccccaagatcctgctgattggagcaaacactttggggtcagcccaactggaaagggttaaaatcccctgacacaaaggaaactctgagtctcatccaatccatcatggagtctcatccaacacatctctgcaagagtctcatccaatcCATCTTTGAGAGAGTCCAATACATCTTTgcaagagtctccatccacatctgaaggaagtctcatcaaccaagagctttagaagttcatcacaaggagatcacgcttgctccgagactccgcatccagactggttcttgcaaagACTCCAACTCTCGCCTTCGCACCGCTGTGAACCATTCATCAAAGTTTTACAACCCGCCTATgagactccgccgggttcgcgcctcactctgtttatcttcctcattggtctttcgagacgctacataaggccaaccacaccaccgaccaatcaacatcgccggaaactccttccaaacaacaacgcaacgagggaacccctggcaacacaaacgcaaGTTCTCCCATCTCTGCACAGGACTTTTGGAGCTCTTTTAGAGTGACTGTTGGGTTCTTTCTTACATCCCTGACTAAACCCCT

Function

GO:

id name namespace
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko05110 Vibrio cholerae infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU414569 lncRNA downstream 5513 5109055 ~ 5110303 (-) True G349833
TU414568 lncRNA downstream 11526 5104030 ~ 5104290 (-) True G349832
TU414566 lncRNA downstream 12863 5102728 ~ 5102953 (-) True G349830
TU414559 lncRNA downstream 49655 5065777 ~ 5066161 (-) True G349823
XR_004577095.1 lncRNA downstream 55428 5055342 ~ 5060388 (-) True LOC117595908
TU414579 lncRNA upstream 12127 5138944 ~ 5139217 (-) True G349843
TU414580 lncRNA upstream 12777 5139594 ~ 5139826 (-) True G349844
TU414695 lncRNA upstream 138035 5264852 ~ 5275075 (-) True G349949
TU414693 lncRNA upstream 196083 5322900 ~ 5327500 (-) False hip1rb
TU414717 lncRNA upstream 384863 5511680 ~ 5514809 (-) True G349959
XM_026939916.2 mRNA downstream 14322 5084057 ~ 5101494 (-) True kmt5ab
XM_034299132.1 mRNA downstream 99401 5007202 ~ 5016415 (-) True mob1a
XM_026940023.2 mRNA downstream 102507 5007202 ~ 5013309 (-) False mob1a
XM_026939573.2 mRNA downstream 111441 5000023 ~ 5004375 (-) True dguok
XM_026939985.2 mRNA downstream 141726 4947952 ~ 4974090 (-) False ebf2
XM_034299369.1 mRNA upstream 105266 5232083 ~ 5233817 (-) True LOC117595987
XM_034298907.1 mRNA upstream 121831 5248648 ~ 5327552 (-) False hip1rb
XM_026939549.2 mRNA upstream 121831 5248648 ~ 5327552 (-) True hip1rb
XM_026939551.2 mRNA upstream 121831 5248648 ~ 5304720 (-) False hip1rb
XM_026939767.2 mRNA upstream 238896 5365713 ~ 5523281 (-) False LOC113542328
TU414275 other downstream 575985 4539283 ~ 4539831 (-) True G349584
XR_004577114.1 other downstream 1728086 3346155 ~ 3387730 (-) False trpm3
XR_003404311.2 other downstream 1949562 3156042 ~ 3166254 (-) False tm2d2
XR_004577129.1 other downstream 2150927 2814858 ~ 2964889 (-) False unc5db
TU412979 other downstream 2329920 2784677 ~ 2785896 (-) True G348491
TU414706 other upstream 194696 5321513 ~ 5364282 (-) True G349951
TU414705 other upstream 235465 5362282 ~ 5367010 (-) False LOC113542328
XR_004577106.1 other upstream 449803 5576620 ~ 5578981 (-) False LOC117595919
XR_004577154.1 other upstream 930164 6056981 ~ 6120959 (-) True pappab
XR_004577155.1 other upstream 930418 6057235 ~ 6120959 (-) False pappab

Expression Profile