Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU414579 |
| length | 274 |
| lncRNA type | inter_gene |
| GC content | 0.45 |
| exon number | 1 |
| gene id | G349843 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047618.1 |
| NCBI id | CM018564.1 |
| chromosome length | 20251756 |
| location | 5138944 ~ 5139217 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU414546 | lncRNA | downstream | 12127 | 5115816 ~ 5126817 (-) | True | G349811 |
| TU414569 | lncRNA | downstream | 28641 | 5109055 ~ 5110303 (-) | True | G349833 |
| TU414568 | lncRNA | downstream | 34654 | 5104030 ~ 5104290 (-) | True | G349832 |
| TU414566 | lncRNA | downstream | 35991 | 5102728 ~ 5102953 (-) | True | G349830 |
| TU414559 | lncRNA | downstream | 72783 | 5065777 ~ 5066161 (-) | True | G349823 |
| TU414580 | lncRNA | upstream | 377 | 5139594 ~ 5139826 (-) | True | G349844 |
| TU414695 | lncRNA | upstream | 125635 | 5264852 ~ 5275075 (-) | True | G349949 |
| TU414693 | lncRNA | upstream | 183683 | 5322900 ~ 5327500 (-) | False | hip1rb |
| TU414717 | lncRNA | upstream | 372463 | 5511680 ~ 5514809 (-) | True | G349959 |
| TU414718 | lncRNA | upstream | 378655 | 5517872 ~ 5518291 (-) | True | G349960 |
| XM_026939916.2 | mRNA | downstream | 37450 | 5084057 ~ 5101494 (-) | True | kmt5ab |
| XM_034299132.1 | mRNA | downstream | 122529 | 5007202 ~ 5016415 (-) | True | mob1a |
| XM_026940023.2 | mRNA | downstream | 125635 | 5007202 ~ 5013309 (-) | False | mob1a |
| XM_026939573.2 | mRNA | downstream | 134569 | 5000023 ~ 5004375 (-) | True | dguok |
| XM_026939985.2 | mRNA | downstream | 164854 | 4947952 ~ 4974090 (-) | False | ebf2 |
| XM_034299369.1 | mRNA | upstream | 92866 | 5232083 ~ 5233817 (-) | True | LOC117595987 |
| XM_034298907.1 | mRNA | upstream | 109431 | 5248648 ~ 5327552 (-) | False | hip1rb |
| XM_026939549.2 | mRNA | upstream | 109431 | 5248648 ~ 5327552 (-) | True | hip1rb |
| XM_026939551.2 | mRNA | upstream | 109431 | 5248648 ~ 5304720 (-) | False | hip1rb |
| XM_026939767.2 | mRNA | upstream | 226496 | 5365713 ~ 5523281 (-) | False | LOC113542328 |
| TU414275 | other | downstream | 599113 | 4539283 ~ 4539831 (-) | True | G349584 |
| XR_004577114.1 | other | downstream | 1751214 | 3346155 ~ 3387730 (-) | False | trpm3 |
| XR_003404311.2 | other | downstream | 1972690 | 3156042 ~ 3166254 (-) | False | tm2d2 |
| XR_004577129.1 | other | downstream | 2174055 | 2814858 ~ 2964889 (-) | False | unc5db |
| TU412979 | other | downstream | 2353048 | 2784677 ~ 2785896 (-) | True | G348491 |
| TU414706 | other | upstream | 182296 | 5321513 ~ 5364282 (-) | True | G349951 |
| TU414705 | other | upstream | 223065 | 5362282 ~ 5367010 (-) | False | LOC113542328 |
| XR_004577106.1 | other | upstream | 437403 | 5576620 ~ 5578981 (-) | False | LOC117595919 |
| XR_004577154.1 | other | upstream | 917764 | 6056981 ~ 6120959 (-) | True | pappab |
| XR_004577155.1 | other | upstream | 918018 | 6057235 ~ 6120959 (-) | False | pappab |
