RNA id: TU414693


Basic Information

Item Value
RNA id TU414693
length 2393
lncRNA type sense_over
GC content 0.36
exon number 2
gene id hip1rb
representative False

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 5248648 ~ 5327552 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCCCGAAAGAGCGCTGAGGCGCATAATCAGGCCATTAATTTCACTGCAGGGACAGCGTTCAAGCGAGATTCAGTGTGTAGGTGTGCcacaatttaaataatttcagaagCTGTACAGCCTGGAGACAATCACAGACTTTACTCAATGTCCTATCCACGATAACGTAGACATTACACCTACGTCCGTGCCGCTCTGTTGTCAAACTGTTCTCTAGCGATTCTCACGTCAGCGTAAAATTCGTGGAGAAAAACTTGGCTACAGCAAAGGATGAATTCGATACGACAGGTGCCATCAAGGATGAAGAGTAAAATGTCGGAAACTAGTTTAGGAGAAGAAAGGGACCGTTTCGACAAACAGCAGcctgctgaagccatggtcggcaaagagcttacaaagcctgtacagggtcccactgttgaaaggtatcgatcaggagagaggtacaaaaaatttccaaaacattacatgaaccatggaacaccgtggaGGCCATCAtcaaaaagtggagaaaatggaacaCCAacgtgacatcaccaagaacaggacgtccctccaaaatttataaaaggacaagacaaaaacttaacagGAAGGCTGCctagagacctacagcaacattaaaggagctacaaaaatatctgacaagtactgattactttctgcatgtgacaacaatctctcatattcttctcATGTCTGGACTATGGTGTagagtggctagacagaagccctttctcacaaaaaaaaaaataaaaataaaaaaaatccaagctcaactaaatcaccccaaactatgtAAAACATcccaaaatgtgttatggtcaaTGAGatcatggtggtggcagcatgattctttagggctgcttttcttcagccacaactggggcttttatcaaggtggagggaataatgaatagctacaaataccagtcgattttagtgcaaaactttCAGGtttctgctagtaagctgaagatgaaaaggaatttccccttttagcatgacaatgacccaaagcatacatccagatcaacaaaagaatggcttaaccaaaagaagatcaagaacaagtttttgaatggcctagccagagcttTTCCCTGACtgttttttacttaatttttatatattgtaatttcacattgaggatgGAATAAGTTCTGACAAGTtctaacaggggtgtgtagacattttatatccactgtatgtatgtgagaACACAACTGATTGCATAGCAACTAGGCAAGAAAAATAATCTCATGGCATTTGAAAACTTTAACAATTATTTTGAAggttataataaaaatgaaaagagaaaggtATGTTTTTTCTCTTGTAAATTTAGTTGAGTAAAAGTATTCAGTTTCAATAATAATACTTGATTAAAATATATCAATAATActttaattaaatacaaatctTCCAAAATAGTACTTAAGTATAGTAGCAAAGTAacttaaattatattataaaattagaTATctataaagctttatttttattacaaatattgtagttctttaaaaataatttttgtgagAAGTCCTGTTTTTCAACTCTGAGCCTGTTAAATTGAGTGACCTCAATCATGTGGTGCAACTAGTACCTGGGTGATAAACTTGCTAAAATAGCCAGTGGAGGCAGCCTGATTACACAGCACAAAGGATTGGCATAAAGCTGTCCCAACAGCCAACTGGGCTGCATGCAGAATTTTACACTCATTTGAGGGAATCAAGTGAGTTTTAAACTCTCACTCACTGAACTCTTACCTGACAAACAGTCCATCTGTGTACTTTTAATGGGTGTctattacaaaattaaaatttaaaagtaaataatttaaaaactagAAATGTTATCAAAACCAAAAATATAGCTCGAGCACACTTGTCATGACCAAGAGCTTCGAAATGCAGTTTGAATGTAGTCTGTATGTGAAGTGGTTTGGGCTGTGATAATCACAGAAATGTATTGAAAAATAAGCAGAAGAATTATTAGGAATAACAATACTTTTGCTTTTACAAAGCAATACTTTTACAAGTGCTTTTCAAGCACTGTAAATATatcaatttacaatttaaaaagtctaaataaataaatatcagtctatacttatatattataattcataagtgcaatatttttaaaaatgtttacttaaaaaaaaatggtcaacTCATCTTTTTTCTATTCAATAATCCACACAGTGTCAAACCATCATTATTCTATGATTATACTGTAGAAGTTGTTGAAAGGATACAATAATAAATCCATAGAGCAGGAATTTTCAAATGGGGGCTGGGGTTGTCCCTTATTTTTCCACAGGGTTGCAAGGTGGCAACCCTTGCTGTAACCTATTTCATGGCTAGAGATAAGATGCCACTAAGTACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU414695 lncRNA downstream 47825 5264852 ~ 5275075 (-) True G349949
TU414580 lncRNA downstream 183074 5139594 ~ 5139826 (-) True G349844
TU414579 lncRNA downstream 183683 5138944 ~ 5139217 (-) True G349843
TU414546 lncRNA downstream 196083 5115816 ~ 5126817 (-) True G349811
TU414569 lncRNA downstream 212597 5109055 ~ 5110303 (-) True G349833
TU414717 lncRNA upstream 184180 5511680 ~ 5514809 (-) True G349959
TU414718 lncRNA upstream 190372 5517872 ~ 5518291 (-) True G349960
TU414824 lncRNA upstream 314385 5641885 ~ 5642417 (-) True G350057
TU414825 lncRNA upstream 314941 5642441 ~ 5645072 (-) True G350058
TU414828 lncRNA upstream 332600 5660100 ~ 5660315 (-) True G350061
XM_026939551.2 mRNA downstream 18180 5248648 ~ 5304720 (-) False hip1rb
XM_034299369.1 mRNA downstream 89083 5232083 ~ 5233817 (-) True LOC117595987
XM_026939916.2 mRNA downstream 221406 5084057 ~ 5101494 (-) True kmt5ab
XM_034299132.1 mRNA downstream 306485 5007202 ~ 5016415 (-) True mob1a
XM_026940023.2 mRNA downstream 309591 5007202 ~ 5013309 (-) False mob1a
XM_026939767.2 mRNA upstream 38213 5365713 ~ 5523281 (-) False LOC113542328
XM_026939764.2 mRNA upstream 38213 5365713 ~ 5523281 (-) False LOC113542328
XM_026939765.2 mRNA upstream 38213 5365713 ~ 5523281 (-) False LOC113542328
XM_026939763.2 mRNA upstream 38213 5365713 ~ 5523281 (-) True LOC113542328
XM_026939766.2 mRNA upstream 43068 5370568 ~ 5523281 (-) False LOC113542328
TU414275 other downstream 783069 4539283 ~ 4539831 (-) True G349584
XR_004577114.1 other downstream 1935170 3346155 ~ 3387730 (-) False trpm3
XR_003404311.2 other downstream 2156646 3156042 ~ 3166254 (-) False tm2d2
XR_004577129.1 other downstream 2358011 2814858 ~ 2964889 (-) False unc5db
TU412979 other downstream 2537004 2784677 ~ 2785896 (-) True G348491
TU414705 other upstream 34782 5362282 ~ 5367010 (-) False LOC113542328
XR_004577106.1 other upstream 249120 5576620 ~ 5578981 (-) False LOC117595919
XR_004577154.1 other upstream 729481 6056981 ~ 6120959 (-) True pappab
XR_004577155.1 other upstream 729735 6057235 ~ 6120959 (-) False pappab
TU415368 other upstream 1019395 6346895 ~ 6352372 (-) False LOC113542569

Expression Profile