RNA id: TU414864


Basic Information

Item Value
RNA id TU414864
length 409
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G350090
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 5690361 ~ 5690769 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAAGCCATTTGTTGTACAGTTCACAATAATCATGTATACATGTTGACAGAACAAGCTCTTACATGTGAATGAAACATGACATTGGGTCTAGGCAGTGCAAACATACTGAGAAAACATAGTTTTCTCCCTTTCACTCTCAAGTTATTTTAGTCCTACATTCAACCGCAAATTTCCTGTTTCAAATTCCaaagtataaagtgtgtatgtacgtcatgtttccttttttcttaaGTCCCTATCCCTTGCCCttcatcacacactgcagtcactTATTCTCGACTCACACTCGCCATCCAATCTGATGGAGTTTGAGAGGATCTGCCATGAAGAATGGGATAAACTGCCCAAATCTATGTGTGCAAAGCTTGCAGAGACGTATCCTAGAAGATTTGTACctgtaattgctgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU414828 lncRNA downstream 30046 5660100 ~ 5660315 (-) True G350061
TU414825 lncRNA downstream 45289 5642441 ~ 5645072 (-) True G350058
TU414824 lncRNA downstream 47944 5641885 ~ 5642417 (-) True G350057
TU414718 lncRNA downstream 172070 5517872 ~ 5518291 (-) True G349960
TU414717 lncRNA downstream 175552 5511680 ~ 5514809 (-) True G349959
XR_004577085.1 lncRNA upstream 17154 5707923 ~ 5710474 (-) True LOC117595899
TU414888 lncRNA upstream 39693 5730462 ~ 5730720 (-) True G350114
XR_004577159.1 lncRNA upstream 247697 5938466 ~ 5941832 (-) True LOC117595975
TU415047 lncRNA upstream 250528 5941297 ~ 5941643 (-) False LOC117595975
TU415366 lncRNA upstream 618363 6309132 ~ 6310450 (-) True G350513
XM_034299056.1 mRNA downstream 111380 5575788 ~ 5578981 (-) False LOC117595919
XM_034299055.1 mRNA downstream 111380 5576620 ~ 5578981 (-) True LOC117595919
XM_026940063.2 mRNA downstream 158046 5524146 ~ 5532315 (-) True LOC113542489
XM_026939766.2 mRNA downstream 167080 5370568 ~ 5523281 (-) False LOC113542328
XM_034299313.1 mRNA upstream 100641 5791410 ~ 5838534 (-) False cntrl
XM_034299312.1 mRNA upstream 100641 5791410 ~ 5838534 (-) True cntrl
XM_026940110.2 mRNA upstream 100641 5791410 ~ 5838533 (-) False cntrl
XM_034299314.1 mRNA upstream 100641 5791410 ~ 5838533 (-) False cntrl
XM_026940113.2 mRNA upstream 149732 5840501 ~ 5865005 (-) True c5
XR_004577106.1 other downstream 111380 5576620 ~ 5578981 (-) False LOC117595919
TU414705 other downstream 323351 5362282 ~ 5367010 (-) False LOC113542328
TU414706 other downstream 326079 5321513 ~ 5364282 (-) True G349951
TU414275 other downstream 1150530 4539283 ~ 4539831 (-) True G349584
XR_004577114.1 other downstream 2302631 3346155 ~ 3387730 (-) False trpm3
XR_004577154.1 other upstream 366212 6056981 ~ 6120959 (-) True pappab
XR_004577155.1 other upstream 366466 6057235 ~ 6120959 (-) False pappab
TU415368 other upstream 656126 6346895 ~ 6352372 (-) False LOC113542569
TU415778 other upstream 1074145 6764914 ~ 6775149 (-) True G350867
XR_003403722.2 other upstream 1912490 7603259 ~ 7607466 (-) False card9

Expression Profile