RNA id: XR_003404315.2


Basic Information

Item Value
RNA id XR_003404315.2
length 1782
lncRNA type inter_gene
GC content 0.39
exon number 5
gene id LOC113542569
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 6346663 ~ 6352372 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTAAGTTTATGTTCATccctgtgcttgtgtgtatggtTAGATTAGTTACCGTATGCACTGTGTATAGTTTTGTTTTCTAGTTTAAGTTTACGAGTCGTGTCTAGCTGTAGCCTAGccttcatgtcttttttttctgtctgcttCCCAATGTTTTTCTTCCCAATGTTTTGCTTCCTTTAAAGAAGTTCTGCATTTTGCATCCGTCTACCTGGATTCTCCGTTATGACATAATTGGACATTATGGAAACATTTGGTGTTAACATTCTACAAACATTGCAtgtgggaCTGAGTGTGCCAAACTTGTTGCCTTCCAAATGAgagagaaactgtgtgtgtgttagtccatAAAACAGGATTTGCTCCTTTAGTCTGGATTAGCTTGAAAAGCACTCACTCCCCACTAAAAGCACTACATATGGCCAAACTACTGTCAGGTTTCTCTGGCTTTGGAGAAGATTATCACTTGCGTAAGTGTTTGAGCACTCAGTGCTGTGTGAAGAACTCCAGCTGCAAACATGCCTCCCTGTTCACCACTGCTGCATGGACTCACACTGTTCTGCTGCTGGGCGCTGCTTTCAATTTTTATAACACAAGctGATGCACTGCAGTGTTATGCCTGTAACATCCAGGGCCAAAGATATGTGGATGTAGGATGTTCCAGTCCTGAGGTCATCACCTGCTCCCATTTCCACAAAGGCTTTAAGCAGCGTTTCTGCATTAGAACAGAAAGCATTGCTTTAGGGATGGTGCTCACCAGTGGATGTGCTACATCCCGTCACTGCCACACAGAGGAACTTCCGGGAGTGAAAATACACTGCTGCGACTCAGATCTGTGTAACTGTGCTTCCTGGCATCACAAGTCGTCATTATCATCACAAATACTTTACTTAATGATGGCTTCCTTTACCACACTGTGGCTACAGCTCTGAAAAGCAAAAATGCCTAAAAAAGAAATGCAGGGACAGAGGGCATAAGTGTCAGAGAATGAAAGCTTGTGCTAAGATTTGAGATGCATTTTAACCTGGTATGGGCCCAAAAACTACTACTGTTGCCCCTGGTAGACAGAACAATCTACCCAAATACAGGTGCTGTGGAAGGCCTGCAAAATATCTTTAGGTCTTTCTGTCCTTTCATCTGTTGTCTTTACTTTGCACTTGTAATCTTGTCTTTACTTTGCATCTTGTTTCTTTTGAGTGTATCttttaatgcaatttaattTTGATAGATATAGTTATGCTCTCATTTTCccatttatgcattttttaatgtttattttagtaAAGTGTTTTAAAACTGGATGGACACAGTTACATGTGGGCTTATCCTTACATgcacactgtccaatcacaatCAGATTACAGTGTCTTAGAGGTGTACAACACAATGTCATCTTGAACCAAACAGAACCTGACAACATAACAGCATTAGCCCAAAGAAATCACAGCTTTTTGCAACACTTCATAAGCAGTGCTTGTGTATCCAGTTATGTGGGCCTTATTTACAGCAGAGTAAATTCTCATCCATCATCATTTCAAATATCACCTTCCCATAGTTGGTCCTGTTATTCCATATCAGTCTTGAAGATTATAACATTTAGTTTGTTGTCATTCTGCAAATCACTGACACTCTTAGAAGTAAACAAAAAGTTGAAAAATCTGAGAAACTGCATTTATTTCATggttataataaaatgtgttagaTTGTTTTGCTAAAGTACTAAATGCTAAGAGAGATTTTTTAACAAGTAGCTTTACTAATAActactgttactattactatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU415366 lncRNA downstream 36213 6309132 ~ 6310450 (-) True G350513
XR_004577159.1 lncRNA downstream 404831 5938466 ~ 5941832 (-) True LOC117595975
TU415047 lncRNA downstream 405020 5941297 ~ 5941643 (-) False LOC117595975
TU414888 lncRNA downstream 615943 5730462 ~ 5730720 (-) True G350114
XR_004577085.1 lncRNA downstream 636189 5707923 ~ 5710474 (-) True LOC117595899
XR_004577094.1 lncRNA upstream 30761 6383104 ~ 6388571 (-) True LOC117595904
TU415571 lncRNA upstream 342512 6694855 ~ 6695063 (-) True G350664
TU415621 lncRNA upstream 390050 6742393 ~ 6742602 (-) True G350714
XR_004577103.1 lncRNA upstream 549950 6902293 ~ 6914343 (-) False LOC113537000
XR_004577105.1 lncRNA upstream 549950 6902293 ~ 6911806 (-) False LOC113537000
XM_026939821.2 mRNA downstream 18835 6281694 ~ 6327828 (-) False rxrab
XM_026939820.2 mRNA downstream 18835 6281694 ~ 6327828 (-) True rxrab
XM_026939823.2 mRNA downstream 18835 6284746 ~ 6327828 (-) False rxrab
XM_026939822.2 mRNA downstream 18835 6284984 ~ 6327828 (-) False rxrab
XM_034299211.1 mRNA downstream 79076 6250931 ~ 6267587 (-) False brd3b
XM_034298906.1 mRNA upstream 91361 6443704 ~ 6452129 (-) False lix1
XM_026939687.2 mRNA upstream 91361 6443704 ~ 6452126 (-) True lix1
XM_026939688.2 mRNA upstream 91361 6443704 ~ 6452123 (-) False lix1
XM_026940249.2 mRNA upstream 124026 6476369 ~ 6479116 (-) False zbtb26
XM_026940252.2 mRNA upstream 124026 6476369 ~ 6479114 (-) False zbtb26
XR_004577154.1 other downstream 225704 6056981 ~ 6120959 (-) True pappab
XR_004577155.1 other downstream 225704 6057235 ~ 6120959 (-) False pappab
XR_004577106.1 other downstream 767682 5576620 ~ 5578981 (-) False LOC117595919
TU414705 other downstream 979653 5362282 ~ 5367010 (-) False LOC113542328
TU414706 other downstream 982381 5321513 ~ 5364282 (-) True G349951
TU415778 other upstream 412571 6764914 ~ 6775149 (-) True G350867
XR_003403722.2 other upstream 1250916 7603259 ~ 7607466 (-) False card9
TU417110 other upstream 2228557 8580900 ~ 8585926 (-) False malt1
XR_004577119.1 other upstream 2688463 9040806 ~ 9049408 (-) False LOC113536894
XR_003403715.2 other upstream 4021086 10373429 ~ 10411686 (-) False iqgap2

Expression Profile