RNA id: XR_004577104.1


Basic Information

Item Value
RNA id XR_004577104.1
length 2026
lncRNA type inter_gene
GC content 0.41
exon number 4
gene id LOC113537000
representative False

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 6902293 ~ 6914343 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCGCCCCTGCGCCGCTATTTACTTTGAAACCCGATTAGAATGGACCGTCTATTGTCGCTAAAGAGGAAGAAACCCCGGTTAGACCGGGTGAAAAGCTAAGGGCGAGCAGAACGCATGTGAAATAAATAGTGGCGCGGGGTGAAAGGGGCTCGAGTCGAACCCCGGAAAGTTTTGGGACGCTTTTGTTCAAAGCTGTAGTCTTAATTAGGCTACGAATGTAGGCTGCCCCGATATGTGAGCGCTCTTCCTCCAGCAAACATTTCATCGCTTATTTATTCCATCACCAAGTGTTCATGGAAATCACATCGATCCGATGATCAACAATAAAATGCACGCATTCGTCGTGTAGTTCTCAGTGAACGGTGCAAAAGACCAAGTAAAAGTACTGGGATGCGCGCGAGCTGCTGCCAGGTTGGCCGCTGTACAGCGTCTGTATAATGGGATGCGATATCATGATGGAGAGAGGGAATAAAATTGAGGTCGATAGCTTAGACACAGAGGGCGAAGCCTAATGTTTTGACACTTAAAAGACTGGgaagagagcgagggagaggcgagagagagggagaggggcaGCGAATGGGAACGCAAGGCGAAGGCAGGGGAACAgcgagagaggagaggagaggagaggagaagagggagaagtgGACACCGCTGCAAAGAGACGCcgctacacacactgcagcactccAGCGTGTCGTGGAATTCCTCTCCTATCACACAGGTTTGGCTAACAGTGAAACTTGAGCAGCTGCAGCTCTATCAGATCTGAGGAGGAAAGAATGCAGCAGTCattcctaaacacacacattcctctaGGCAAGCTTTATAATTCTCCCTGTCCGAAACATGCATTACAACTTTAATTTCatgttgaataataataaaaaaaaccacaaaatgtATTCACAGTTGTGTTCTTCCCGGGCTTCTTGCATAACAACTGCATTGTTTTGGGAAATGTACATTAAGTGTCTTGAATACCTGTGTAGAGATacataaactaaataaacaactATAATGTAAATACTGAGCATGTATATACTGTTACAGCTGGATTGCAGCAGtacttttatataaatgtatatatagaAAGTACACAAGTGTATGTTGACACAAGTGTATGCTGACATCAGTTCTCTCATGTGTAACAGGGAAAGATAAATTCATTTGCACTGATTTGCCAACGAGATTTTCTTTCTGATTGTGACTGTATGTACATACCAACGcagtaaatgtttttctgtataGTTTCTATGTAAGCTTACATAGAAAGTTTTATACATAGTAACTGAATTTAGCAGTAAACCCACTGActttaataattttgataaaACACAAAGGCAAAAGAAAAAGTCAACAAACATAAAGGAgatggaaagaagaaagaaaaaataaaagaagaagaaagaaaattaaaaaaagggaaaagcaAGTAAGTAAGAATAAAGATAAATTAATTCAGCCACGTCTTTTATTATCCTAATCATGACTGCACAGTATGTGGCTGCTAAATATCTCCTCATATTACAAAATGATAATTGGCTTACTTAATGTTCACTGTTATCATTTGATGCTAATGTCATGTCTGACAGAGCACAGAGAACGAGTATGATACCACTTGGTCCCTCGTTGTGTCGTGCACTTTCCCTTCTAGGTATTTGTGACTCAGCCGTGCCAGCATGAACAAAAGCTATGCCTCTTCATCTATCAGAGCATGGTTAAAGGTAAGTGGCACCCCCTATTAGGATGACAAGGAAATTAATGTCTGTCCCCTGGTTCTGTATTACTTATTTATAGGTTAGCACCCTTTCCTTGCTTTGGGCATGTCTGTTACAATTTTTGAGAGCACAGGTGAACACCATATACACCTGAGATTACAACTGGCATGAAAGCAGATATACAGTGTATTGTTAATCTCCACAAATTGTTACTGTGACTAATCCTTTAGTGTATTTGTACAGGACACTGCTGAAGGAAACATCATGtatttgaatgaaataaattGACCACAAGCATGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU415621 lncRNA downstream 159691 6742393 ~ 6742602 (-) True G350714
TU415571 lncRNA downstream 207230 6694855 ~ 6695063 (-) True G350664
XR_004577094.1 lncRNA downstream 513722 6383104 ~ 6388571 (-) True LOC117595904
XR_003404315.2 lncRNA downstream 549950 6346663 ~ 6352343 (-) True LOC113542569
TU415366 lncRNA downstream 591843 6309132 ~ 6310450 (-) True G350513
TU415818 lncRNA upstream 176149 7087714 ~ 7088036 (-) True G350906
TU415951 lncRNA upstream 289181 7200746 ~ 7201552 (-) True G351033
TU416207 lncRNA upstream 555031 7466596 ~ 7466953 (-) True G351266
TU416253 lncRNA upstream 626473 7538038 ~ 7538341 (-) True G351308
TU416324 lncRNA upstream 637021 7548586 ~ 7642268 (-) False G351362
XM_034299045.1 mRNA downstream 348409 6537239 ~ 6553884 (-) False LOC113537041
XM_034299043.1 mRNA downstream 348409 6537239 ~ 6553884 (-) False LOC113537041
XM_034299044.1 mRNA downstream 348409 6537308 ~ 6553884 (-) True LOC113537041
XM_034299048.1 mRNA downstream 365008 6534776 ~ 6537285 (-) True LOC113537042
XM_034299046.1 mRNA downstream 387367 6512434 ~ 6514926 (-) True LOC117595918
XM_026931208.2 mRNA upstream 25720 6937285 ~ 7104859 (-) True fam172a
XM_026931276.2 mRNA upstream 194587 7106152 ~ 7225878 (-) True kiaa0825
XM_034299066.1 mRNA upstream 229636 7141201 ~ 7226684 (-) False kiaa0825
XM_034299065.1 mRNA upstream 229636 7141201 ~ 7226310 (-) False kiaa0825
XM_026931278.2 mRNA upstream 229636 7141201 ~ 7225879 (-) False kiaa0825
TU415778 other downstream 127144 6764914 ~ 6775149 (-) True G350867
TU415368 other downstream 549921 6346895 ~ 6352372 (-) False LOC113542569
XR_004577154.1 other downstream 781334 6056981 ~ 6120959 (-) True pappab
XR_004577155.1 other downstream 781334 6057235 ~ 6120959 (-) False pappab
XR_004577106.1 other downstream 1323312 5576620 ~ 5578981 (-) False LOC117595919
XR_003403722.2 other upstream 691694 7603259 ~ 7607466 (-) False card9
TU417110 other upstream 1669335 8580900 ~ 8585926 (-) False malt1
XR_004577119.1 other upstream 2129241 9040806 ~ 9049408 (-) False LOC113536894
XR_003403715.2 other upstream 3461864 10373429 ~ 10411686 (-) False iqgap2
TU418361 other upstream 3597518 10509083 ~ 10517205 (-) False LOC113536921

Expression Profile