RNA id: TU416325


Basic Information

Item Value
RNA id TU416325
length 3270
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G351362
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 7548586 ~ 7642268 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCTTTCAACTTCTGTGTAGATATGTGTAGAGTGAACAcatgaatgtgaaaaaaaaaaaacctcatttttttcacattgctTGAGTTTATAGAACGGAGATTCTTCATGTATAGGAAGCTGTAATTCATTGCTGTATCTGTGACACGATCATTAAATATGAGCAACACACAATCAAGCATTTTAGCTCAGTGTTTCTAACATGATAATAATCCCAAGCTTAAAGAGATACTGCTGTAgccaacctcttttttttttttttttttaaacaaaacagaataaacCTTTAAGCAAGAGGCAGCGCTAAGGTTTTACAGAGATTTCACATTACGTTATCAGACACAGTGGGATTGTAAACACAcagtaataagaaatatataCTATTGTGATGACAGTAATGGAAACCATACTGAATGGAGAGTGAATGAGTATTGCATATTGCTCAGAACCTTGACTGGTGTAGAGAACGATTTCAAACACTGACGATTGTTCGTTAAAAACCTTCTCTGAAGTAAGACTGAGGCCACAATTCTACTGAGTAAGGAGGAAAATACATGATCCGACAAATGAAAAGTGGTTATGCTGCATTACTAAGACATTAAGCCTTACGGGAGTCTTTCTTAAAAATCAGTTGATGAACTATACAGATGTATTCagacacaacacaaaacacgtCGTAAGAATAAATAGGACACACGGGTACTTAAGTgtttaaataaatccaaatattACACTAAATTATTGTTATCTTGCTAAATGTTCAGTTCCACCACTTTTCActcattaaatatatttcagacTATTGCAACAGTAGATCTTCTCCCTGCTGTATATCTCTAAACCCCCTGAGCAAACACAGCAAAAACCATTTTAAATACTGAATGAGTCtggcaaaagaaaaacaacaaaggaGGAGAAAACGAAGTGACATTCAGAGCACACGTTCACGTCACAACCAAAACGAGAGAAGAAATCATGAGTACTTTGGTATCCAAGTGTTCTGATAAAGGGTAACTAAGCCATCACAAGTACAACcattttcatcttcagtgtCATGTACACACGACTAATAGGTTGGTGCTTTGGATTTCCGAAAGAAATGTGGGCTTGAGATATCTTTCCTATATGTTTCAGATACTTCCGTTAAAATTCTGACAAAagtaaaatcaacaaaaaatatCTATTTTATGAAGTGCCAGCTAATACTGACCACACCGAATTTTCTATTTTAGAATTGTACTACAATTGTGATATGAACTTGTCCGTGCAAATGCCTACAAACTGTAATGTCGGGTAAACATGCCACAAATAAAAGCTAAATGAGACATGTGACCTGACATACAGAGCACAAATCATTTCTCATCGTCATTCATAACAGATCTTTCTAACCTGGACCATGCGGCAGGAAACAAATGGAGCGGATCCAATTTACAGGAGCCAGGTGTTTCAATAAACACGAgtgtaaatgaaatattcagCCTCACACCTAGACCTGAACATTTCAGATTCAGACTAAATAGGATGGGATGAAAAACCAAATATGTACTCTTTTACAAACCAGGAGCTTTGTGTTTTAGTCAGAGGCAACATCCATACATCCCATACTGTAGCCgccttttcatttcttttatgtGCGGCTCTGAAATAATAGAAGAAACTCAATCTCTTATGAGGAGGAATCTGGGATAGAAAGGGTAGCTTATATTTCCAGGTAATTGCATCATCTGGGGAAATTAGTGCCTCTGCAAAGTTATCTCCTAACAAGGATGCAAAAAGTCAGCAACTTTTCTGTAGAGACATTAGTGAGATTTGCTGCTTTCTTCCTTTGCATATTAGATTTTCTCTTCTTGAGTGAAACTGATGCAGATGCATTGCGGAACTCACAATAGTTGAAGTGAAGGAGAAAACATCCTTAAAGAGCACCAGAATTGTCACAAGCTATAGGCTACGTGGCAACGTCACAAAtgcatacactctcagaaaaaaattcacCCTCGAGGGTATACCTTTAATGTGCACCTTTCAAAACACAGatatacctttaaaaatgatttaagataCACAAAACGTCTTTAGGTTCATGTTTGAAAGgtccacattattattatttttttctgacagtgtaCTACTTACACAAACCTGAAATTAGATGTTGCATTATTTCTGATGGCACAACACCAAGCACATTGGGATTGTACAGTGTTTCTGAAGCTGTCAGATAACGGAGATCATATGGACTTCAGATGACATATGATGCATTTTGTTCTCGCTCGTGTTACAGAAGAAAACAGTACCAGTAACTTTAGTTCCACATCCTGTACTCTAAGTCAAAATAACGCTGTTATACGTTCATCATCTGATCCTGGAATCATGTATTGTcattaaatgtaatcatttgAAGAGACTAATAACAAGAAGTTCTTTGAAAAAAGTGAAGCATCCGAAAGTGTTTCCTGAAGTgtaaactttttctttttttttgctctggaTGCGTTATATTAATTTACATCATGGagaaagtatataaaataaaatatgtatttaatagaattaaaaacagctcataaaatgtaaaaaaaaaaaaaaaaatagtgaagcTAGCATTTATCAGTTGTTATTAAGTTActgtttacatttgtttttgttttttaacaagtGTTCTGTCAGTTATAAATAGATATATTTATCTGTATAATATTCAAAACTGAAAAATTTCCATcctgttattattgttacatTCATTGCTCGCTGTAACTCTGCAACATAAACCATACCAgccacagtctcacacacacaaacacatacacacacgcagcgcacacacacttcccttaTTAGTGAATAAGCCTGTCCTGTTTGTAGAAGCTCCAGAGATAAGATGTGCTTTATGTGCGGTTGAGTGTCTGGAAGATTCTGGATATCTGGAGCATGACGGGGCCAGTCTCTGGATCATTCATCCACTGTGTGCTGTTCAGAGGATTCTCCAGCATGTCCTCAAACGCTGCCGCCAAAAAACGCAATACGACaccaggattaaaaaaaacaccacaaaacaaCCACCAGTCAACAAGTAAAAGTCCTGTCTGGCAAACAAGCAGTGGTTTCTGAGAGACTGCTTTTCAGTACTGCTCTTCATCAAAATCAGTCACGTTCCAAAGGGTCAGCAACGGGTCAGCTTAAAAGGCACGGAGCAGACATGAAATAGCAAAACAGAGCCAACAATGCAGTAAACTGAGAAGACGGGTCATCTCGAGACGGCACATGACCACAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU416355 lncRNA downstream 2786 7635102 ~ 7636193 (-) True G351384
TU416344 lncRNA downstream 48763 7585697 ~ 7590216 (-) False ccdc180
TU416253 lncRNA downstream 100638 7538038 ~ 7538341 (-) True G351308
TU416207 lncRNA downstream 172026 7466596 ~ 7466953 (-) True G351266
TU415951 lncRNA downstream 437427 7200746 ~ 7201552 (-) True G351033
TU416500 lncRNA upstream 138512 7780780 ~ 7781553 (-) True G351517
TU416514 lncRNA upstream 146806 7789074 ~ 7793146 (-) True G351529
TU416515 lncRNA upstream 146806 7789074 ~ 7848880 (-) False G351529
TU416638 lncRNA upstream 306932 7949200 ~ 7950503 (-) True G351625
TU416714 lncRNA upstream 467918 8110186 ~ 8136037 (-) True G351687
XM_026931073.2 mRNA downstream 11125 7621349 ~ 7627854 (-) True entr1
XM_034299373.1 mRNA downstream 18417 7607784 ~ 7620562 (-) True snapc4
XM_026931338.2 mRNA downstream 31513 7602907 ~ 7607466 (-) True card9
XM_026931403.2 mRNA downstream 41017 7585472 ~ 7597962 (-) True ccdc180
XM_026931070.2 mRNA downstream 120566 7509917 ~ 7518413 (-) True hmgcra
XM_026931165.2 mRNA upstream 156941 7799209 ~ 7802780 (-) False otpb
XM_026931164.2 mRNA upstream 156941 7799209 ~ 7802780 (-) True otpb
XM_026931002.2 mRNA upstream 209693 7851961 ~ 7863470 (-) True lhfpl2b
XM_026931065.2 mRNA upstream 229924 7872192 ~ 7896685 (-) True homer1b
XM_026931063.2 mRNA upstream 229924 7872192 ~ 7891709 (-) False homer1b
XR_003403722.2 other downstream 31513 7603259 ~ 7607466 (-) False card9
TU415778 other downstream 863830 6764914 ~ 6775149 (-) True G350867
TU415368 other downstream 1286607 6346895 ~ 6352372 (-) False LOC113542569
XR_004577154.1 other downstream 1518020 6056981 ~ 6120959 (-) True pappab
TU417110 other upstream 938632 8580900 ~ 8585926 (-) False malt1
XR_004577119.1 other upstream 1398538 9040806 ~ 9049408 (-) False LOC113536894
XR_003403715.2 other upstream 2731161 10373429 ~ 10411686 (-) False iqgap2
TU418361 other upstream 2866815 10509083 ~ 10517205 (-) False LOC113536921
XR_004577163.1 other upstream 3092822 10735090 ~ 10748838 (-) False LOC113536823

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU577941 True 346 lncRNA 0.48 1 NC_048570.1 42576553 ~ 42576898 (+)