RNA id: XM_026931394.2


Basic Information

Item Value
RNA id XM_026931394.2
length 2500
RNA type mRNA
GC content 0.45
exon number 11
gene id sh2d3cb
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 8640942 ~ 8654612 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTCCGCACTGACAGAGAATGAACAAACAGCAATTCTAAAATACCTAGTCTTATCAGTTTATTAATTATGGACAGTGATTATTAATCCATGGATTTCTTAGATTGGTTTTGGATATTGAGTAACAGTCTTCTGATTCCTCAAACTTGTCAGTCATTCTGATTCCATGGAAAACAGAGGTGAATATGTAATGTTTTCAAAAGAGACGTGCCTGCTGGACACTGCATCAGAGAAACTGAGGAAAGAGCTGGAGGAAGAGCTGAAACTCAGCAGCCACAACATACAAAGTCATGGCTGGTACCATGGACGTATACCTTGGGAGGTTTCAGAGTCTCTGGTGCTACAGGATGGGGATTTCCTGATTCGCGATTCTTTGACCAGTTTGGGAGATTACGTCCTAACCTGCCGCTGGAATCAGAAACCTCTCCACTTCTTGATCAGCAAAGTTCTGCTGAGATCCAGTGACACATACACACGGATACAGTATGTTCTGGAAGGAGAGCAGTTTGACTCCATTCCAGCGTTGGTCCATTTCTATGTGGGCGGCCAGACGCCACTTACTCAACACAGCGGCGCACACGTGATTTCCCCAGTCAACAGAACTGTACCACTGCGCTCTCTGGAGACAATGTTTGGTCAGACTAGTAAGGAGGGGACACCATTAAACTCACCTGTGCACAGGAAGGGAAGTTTAGGAATGACAGAGGCTCTGGCATTTGAGTTAATAAACCCTCAGAGGGAGGCAGTCAAGAGCTTCGTTGGAAGCTTGGAACAGCGTGTTGTAGTGACGTCATccccaaccccactgaacacacTCTACGGACGTAGAAAAAGTCCATCACGCAATAGGAAGTTTGTTGTGGTCCCTTCATCGCCCGTTTTGCAAAGACCCGATGACATGCACCTTTGTACTTCTCCAACTGAGAGTGCTGTCATCTATTTGGAGCCTACAGACAACACATGGTCTCCCAGCACGGAGTCCTGTCAAAGCACTGCTGCAGACCCCAGTGACCTGCAATCCAGCACAGGCCTTTATCCACACAGCCTTGCTCGTATACAGTCACCCTTCAGTGGACAAGAGGACCAGACAGTGCAGGGCTTCATGGACGAGGACAATGAGGATTATTTAATGCCACTTGTAATTGAATCAGCCTCCAGTTTCAGACCCAGCACGTACCAGTCCCCGCTTCTACCCGCAGAAAATAAACCACTAGAAGCAAGAGTGTTAAGGAGAGCGAAGGAGGTGCTTATAGATGCTGATACAAAGACGATGGCCATGCACATCACCAAAATTGACTGCATGGTTGCTCGTATATTGGATTTATCCAGTGAGAATACAAGAGGGATGGCTGTGAGCTCGGGAATGGAGCTGCTCACACTTCCACATGGCCACCATCTCCGACAAGACCTGCTGGAAAGGTTCTATACCATGTCCATCATGCTGGCTATGGTGCTGTTGGGTTGCACGGGCAGTGTGGAGGAAAGAGGCTCCCTACTGCACAGAATTATCTCACTGGCATCTGAGCTGAAGACTAACCTGGGCAATATGTTTGGCTTTGCTGCAGTTATGAGAGTCCTAGAACTTCCACAGATTGTTCGGTTGGATGAGACGTGGATGGCTTTAAggcaaaaatacacagaaagtgCAGTTCTGTATGAGAAAACCTTGAGGCCCTCTTTGAAGAGAATGAATGATGGAAAAGAGCCCTGTGACCCATCGGAGATGACTGTCCCTCATGTGCTCCCTCTGCTGCTCCTGCTTGAGAAGAGTGCCGTGATTCTTGAAGGGTCTGAGTCCTGGGAGAGTCTCGACTCTGGAATGGACTCTTTGCTGTGTCATTTAAATGCTGCTCGTACCATTGCATGCCATGGAGAAACCTACTGTTCTAATGCCAAGGCAAAACTACAGGGTTTCCATGAGCAGCCAGACGTACTAGAAGTTTTCCTGACTGAGTTCCAGATGCGTCTGCTGTGGGGGAGCCGGGGAGCGGAGGCGAACAGGGAGGAGCGCTATGAGAAATTTGACAAAGTGCTAACAGCCCTGTCCAACAGACTGGAACCTTCTCAGCAGGCAGAATGATACACATTGCACATGTCTCACTCTGAAATgtgtatatatctttttttttttttttttttttgatgaatgcCAAGGGTGTACATAGAGTAGAATGATGCAACTCTGTATGGCGGAATAACATTTcaaattcttttaaacttttacatGGATTTGTAAATAATGTAGATATAAATACTATTCAGATTTGTATTTCAAAGTATGATTAACATTATTTTGGTTTACTTCtattaaataaatctatcagtcatttctttataaattggtttataaattatgttttattttgtcataaCCTATATAAGCCTTTATACTGACTGTTTTATGATGTCAcaaccttcttttttttctcagattaaACCGGTTCAGTTGTGCGTCCTTGCattgtttgttttaatcaaacattaaatcaaattttCTGCTTA

Function

GO: NA

KEGG:

id description
K23690 SH2D3C; SH2 domain-containing protein 3C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU417139 lncRNA downstream 12369 8628413 ~ 8629092 (-) True G352036
TU417138 lncRNA downstream 13140 8627430 ~ 8628321 (-) True G352035
TU416987 lncRNA downstream 87243 8553721 ~ 8554218 (-) False hint2
TU417101 lncRNA downstream 89339 8551921 ~ 8552122 (-) True G352011
TU417100 lncRNA downstream 89677 8551580 ~ 8551784 (-) True G352010
TU417175 lncRNA upstream 76471 8731083 ~ 8733868 (-) True G352068
XR_003403714.2 lncRNA upstream 317020 8971632 ~ 8976888 (-) True LOC113536901
TU417671 lncRNA upstream 527536 9182148 ~ 9184754 (-) True G352491
TU417681 lncRNA upstream 542171 9196783 ~ 9200688 (-) True G352498
TU417667 lncRNA upstream 551816 9206428 ~ 9210530 (-) True G352487
XM_026931003.2 mRNA downstream 716 8634520 ~ 8640745 (-) True tor2a
XM_026931473.2 mRNA downstream 28841 8604203 ~ 8612620 (-) False LOC113537140
XM_026931476.2 mRNA downstream 29504 8603201 ~ 8611957 (-) True LOC113537140
XM_026931478.2 mRNA downstream 29504 8604203 ~ 8611957 (-) False LOC113537140
XM_026931475.2 mRNA downstream 29796 8604203 ~ 8611665 (-) False LOC113537140
XM_026931425.2 mRNA upstream 27520 8682132 ~ 8747709 (-) False col27a1b
XM_026931424.2 mRNA upstream 27520 8682132 ~ 8747709 (-) True col27a1b
XM_026930995.2 mRNA upstream 109604 8764216 ~ 8773109 (-) True LOC113536867
XM_034298980.1 mRNA upstream 247570 8902182 ~ 8907720 (-) False LOC113536953
XM_026931141.2 mRNA upstream 247570 8902182 ~ 8907720 (-) True LOC113536953
TU417110 other downstream 55535 8580900 ~ 8585926 (-) False malt1
XR_003403722.2 other downstream 1033995 7603259 ~ 7607466 (-) False card9
TU415778 other downstream 1866312 6764914 ~ 6775149 (-) True G350867
TU415368 other downstream 2289089 6346895 ~ 6352372 (-) False LOC113542569
XR_004577155.1 other downstream 2520502 6057235 ~ 6120959 (-) False pappab
XR_004577119.1 other upstream 386194 9040806 ~ 9049408 (-) False LOC113536894
XR_003403715.2 other upstream 1718817 10373429 ~ 10411686 (-) False iqgap2
TU418361 other upstream 1854471 10509083 ~ 10517205 (-) False LOC113536921
XR_004577163.1 other upstream 2080478 10735090 ~ 10748838 (-) False LOC113536823
TU420171 other upstream 5067493 13722105 ~ 13724835 (-) True mrpl41

Expression Profile