RNA id: TU417800


Basic Information

Item Value
RNA id TU417800
length 522
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G352610
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 9681029 ~ 9681798 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGGAAACACCACCGCCATCAGTGTTTGCACCTTTTACTGAGGATTAGAGTCCTGCTTGCTTTCAAAAAAAGAGGCTAAATATACACAATGCTGAAATCAAACACATTCCTCCCTCAGCACTAAGGCAGTTGGCATGAGAATGTTGAATGTTGAGGTCTGCTGGGAACAGTAGGATACTGGAAAGAGAAGAAGGGGGAGAACATGGGCCTCCAGATCAACAGGGGCCAGTGTTTGAGCCCTTTGCCCCATAGCCGCGGGCCAGCTGTCCTAAAAAGCAGTGATCCTCTCGTCTGGAGCTCCGTTGTTTACCCAGGGCCATGCACACTACAGCGGCCAGCACAAAAGCCCTGTGGGATTCCCGATCTTCTTTCGTTTTGATCTCAGAGCTACCTGCCTCGGCTCGGGAAGTCTCCAAAGAGTACGGCTCCAAGAGAAGGACTTTACCAGAAGCAAGGCTCCTCAACTCATCTTCTGTTGGATGCTGGTACCAACGCAGACTGAAACATGCAAGCCAggacata

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0071944 cell periphery cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577161.1 lncRNA downstream 74055 9603400 ~ 9606974 (-) True LOC117595977
TU417696 lncRNA downstream 348058 9332766 ~ 9332971 (-) True G352512
TU417667 lncRNA downstream 470499 9206428 ~ 9210530 (-) True G352487
TU417681 lncRNA downstream 480341 9196783 ~ 9200688 (-) True G352498
TU417671 lncRNA downstream 496275 9182148 ~ 9184754 (-) True G352491
TU417869 lncRNA upstream 94168 9775966 ~ 9814416 (-) True LOC113536891
TU418084 lncRNA upstream 467459 10149257 ~ 10225339 (-) False G352869
TU418083 lncRNA upstream 487700 10169498 ~ 10225339 (-) False G352869
TU418085 lncRNA upstream 496891 10178689 ~ 10225339 (-) False G352869
TU418081 lncRNA upstream 536026 10217824 ~ 10225339 (-) True G352869
XM_026931311.2 mRNA downstream 308410 9369976 ~ 9372619 (-) True polr3g
XM_034299190.1 mRNA downstream 320148 9229961 ~ 9360881 (-) True adgrv1
XM_026931552.2 mRNA downstream 504567 9169861 ~ 9176462 (-) True pmpca
XM_026931553.2 mRNA downstream 506696 9169861 ~ 9174333 (-) False pmpca
XM_026931558.2 mRNA downstream 526341 9148049 ~ 9154688 (-) False coq2
XM_026931085.2 mRNA upstream 44597 9726395 ~ 9728449 (-) True LOC113536918
XM_034298909.1 mRNA upstream 57213 9739011 ~ 9767469 (-) False rasa1a
XM_026931257.2 mRNA upstream 57213 9739011 ~ 9767469 (-) True rasa1a
XM_026931041.2 mRNA upstream 128383 9810181 ~ 9814411 (-) False LOC113536891
XM_034299015.1 mRNA upstream 555838 10237636 ~ 10269049 (-) True vcana
XR_004577119.1 other downstream 631621 9040806 ~ 9049408 (-) False LOC113536894
TU417110 other downstream 1095103 8580900 ~ 8585926 (-) False malt1
XR_003403722.2 other downstream 2073563 7603259 ~ 7607466 (-) False card9
TU415778 other downstream 2905880 6764914 ~ 6775149 (-) True G350867
TU415368 other downstream 3328657 6346895 ~ 6352372 (-) False LOC113542569
XR_003403715.2 other upstream 691631 10373429 ~ 10411686 (-) False iqgap2
TU418361 other upstream 827285 10509083 ~ 10517205 (-) False LOC113536921
XR_004577163.1 other upstream 1053292 10735090 ~ 10748838 (-) False LOC113536823
TU420171 other upstream 4040307 13722105 ~ 13724835 (-) True mrpl41
TU420169 other upstream 4040371 13722169 ~ 13724835 (-) False mrpl41

Expression Profile