RNA id: TU417869


Basic Information

Item Value
RNA id TU417869
length 432
lncRNA type sense_over
GC content 0.49
exon number 4
gene id LOC113536891
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 9775966 ~ 9814416 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATGAGGCTGTTCGGCCAAGGTTGCACAGAGTAGCTGAGAGAAGCTGAGAGCAGCTGAGAGACGAGTCGAGCTCACATTTGCCCTTAAAGTTAGCAGCTATCCGTGCAGCATGCTTGGCCACGCAGTGCGCAGATTCACCACCTCCGCAGTCCGCGCGTCTCACTACGCTGAGGGACCGGGACAGAACCTGCCATTCTCAGTAGATAACAAGTGGAAGCTGCTGGGGATGATGGTGCTGTTCTTCGGCAGTGGCTTTACCTTTCCCTTCATCGTAGTCAGGCACCAGATCCTGAAGAAGTGAAGCTCTGGCTTGTCTGATATGGTCATTGTGAATACGTGTCCACAGCAGCTCTCTTCATTCTTCAGATGTGGCTCCCTTAATgctaatttgtaaataaaatgatataatctTAaaaaaaaaacaaaacaaa

Function

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0015988 energy coupled proton transmembrane transport, against electrochemical gradient biological_process
GO:0070469 respirasome cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function

KEGG:

id description
ko00020 Citrate cycle (TCA cycle)
ko00190 Oxidative phosphorylation
ko04260 Cardiac muscle contraction
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU417800 lncRNA downstream 94168 9681029 ~ 9681798 (-) True G352610
XR_004577161.1 lncRNA downstream 168992 9603400 ~ 9606974 (-) True LOC117595977
TU417696 lncRNA downstream 442995 9332766 ~ 9332971 (-) True G352512
TU417667 lncRNA downstream 565436 9206428 ~ 9210530 (-) True G352487
TU417681 lncRNA downstream 575278 9196783 ~ 9200688 (-) True G352498
TU418084 lncRNA upstream 334841 10149257 ~ 10225339 (-) False G352869
TU418083 lncRNA upstream 355082 10169498 ~ 10225339 (-) False G352869
TU418085 lncRNA upstream 364273 10178689 ~ 10225339 (-) False G352869
TU418081 lncRNA upstream 403408 10217824 ~ 10225339 (-) True G352869
TU418094 lncRNA upstream 422468 10236884 ~ 10237277 (-) True G352878
XM_034298909.1 mRNA downstream 8497 9739011 ~ 9767469 (-) False rasa1a
XM_026931257.2 mRNA downstream 8497 9739011 ~ 9767469 (-) True rasa1a
XM_026931085.2 mRNA downstream 47517 9726395 ~ 9728449 (-) True LOC113536918
XM_026931311.2 mRNA downstream 403347 9369976 ~ 9372619 (-) True polr3g
XM_034299190.1 mRNA downstream 415085 9229961 ~ 9360881 (-) True adgrv1
XM_034299015.1 mRNA upstream 423220 10237636 ~ 10269049 (-) True vcana
XM_026931268.2 mRNA upstream 423220 10237636 ~ 10269049 (-) False vcana
XM_026931427.2 mRNA upstream 519010 10333426 ~ 10339194 (-) True zgc:110626
XM_026931283.2 mRNA upstream 552979 10367395 ~ 10369658 (-) True f2r
XM_026931152.2 mRNA upstream 555746 10370162 ~ 10411685 (-) True iqgap2
XR_004577119.1 other downstream 726558 9040806 ~ 9049408 (-) False LOC113536894
TU417110 other downstream 1190040 8580900 ~ 8585926 (-) False malt1
XR_003403722.2 other downstream 2168500 7603259 ~ 7607466 (-) False card9
TU415778 other downstream 3000817 6764914 ~ 6775149 (-) True G350867
TU415368 other downstream 3423594 6346895 ~ 6352372 (-) False LOC113542569
XR_003403715.2 other upstream 559013 10373429 ~ 10411686 (-) False iqgap2
TU418361 other upstream 694667 10509083 ~ 10517205 (-) False LOC113536921
XR_004577163.1 other upstream 920674 10735090 ~ 10748838 (-) False LOC113536823
TU420171 other upstream 3907689 13722105 ~ 13724835 (-) True mrpl41
TU420169 other upstream 3907753 13722169 ~ 13724835 (-) False mrpl41

Expression Profile