RNA id: TU418081


Basic Information

Item Value
RNA id TU418081
length 1183
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G352869
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 10149257 ~ 10225339 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCACACTTTACTAAtggagaaaataataaattcaaagGCCATTTCAATTTTTGTGaggttttattttccatttcgAAACTTGATGTAAAAACAATACACTGTAtttaagttgaaaaaaaaaaaaaaaagaatgatgttttgtgcataaaAAGTAGCATTATTTGTCTGTATTGTAGCTTTGCAGTACAAAGAGGAATAATAGGTGGAGTTTTCTTCCCAATCACATAAACAAACCCACGTCTATAGAAATACAGAATATTACATCTGCTTTCAGTGGCAAGTCATTGTAGCTTATTCCATAAACATATGAGAAAttggtgttctttaataaacccAACCCAATGACACAATGTTTTGTTGGCACTCAATTATGCAAGTGCAAGGCTCAGATTAGTCATTTACGGTGCAGTCGCTAGTAAGCAACTGGGTCCTATTAAAGATTTCATGTGCCTCTGGGTCAAATGTAACTGCATGTGCAGCTTTCCGCAATGACCAAAAATGCATTGCGTCTCcagcagcttgtcatatttgtttttttagatAGAAATTGTATTAGCTGTGATATCATAAGATAGGACAAATTTGGTGCACGGGAAGAAAATATTTGAACAAAACTATTGCCTTAGCTCACCTTTTAGGCAAATGGTATTATCAATTATCTCCTTTAACAATAAAGACTAGGAAGAATGTGCTTCAGCACATATTACAGAACAAGGACATTATGTTCCATTTGTTTTCTggggaaaagagggaaaaatttTAGAAGCAGGAAGACTAATGGAAAGTATTTGTTACAAGTAGGTACCAAGGCTGCTGACACTCTGGGTCATAtacattcatttttacacacacacacacacacacacacacacacacacacagagaatgacacacatgcagattcattcattctcagaaaaacacagatttgCCATACCTGCTGTATATGCGTTGTTGGCAAGGCTCAGCCAGACTAACGCCAAGGGAATTATGGTTAtcatcttctttcttttttctttgtctttgggCCTGTGCACTAGAGAAACAAAAAAGGGGGATGTTGGCTCAAACTTAGGTAGACTACCCCTGGATACTGCCCAGAAAATTGTTCTGCTTTCTTCGTTGGTGTGAGGAGGTGTAGGCAGCAGACAGTTGAGGTGCCACTGAAAAGTTTGGGGTCCTC

Function

GO:

id name namespace
GO:0008144 drug binding molecular_function
GO:0019825 oxygen binding molecular_function
GO:0036094 small molecule binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU417869 lncRNA downstream 403408 9775966 ~ 9814416 (-) True LOC113536891
TU417800 lncRNA downstream 536026 9681029 ~ 9681798 (-) True G352610
XR_004577161.1 lncRNA downstream 610850 9603400 ~ 9606974 (-) True LOC117595977
TU417696 lncRNA downstream 884853 9332766 ~ 9332971 (-) True G352512
TU417667 lncRNA downstream 1007294 9206428 ~ 9210530 (-) True G352487
TU418094 lncRNA upstream 11545 10236884 ~ 10237277 (-) True G352878
TU418097 lncRNA upstream 83946 10309285 ~ 10309632 (-) True G352881
TU418099 lncRNA upstream 87248 10312587 ~ 10313356 (-) True G352883
TU418342 lncRNA upstream 206688 10432027 ~ 10588716 (-) True G353075
TU418337 lncRNA upstream 357486 10582825 ~ 10586818 (-) True G353070
XM_026931041.2 mRNA downstream 403413 9810181 ~ 9814411 (-) False LOC113536891
XM_034298909.1 mRNA downstream 450355 9739011 ~ 9767469 (-) False rasa1a
XM_026931257.2 mRNA downstream 450355 9739011 ~ 9767469 (-) True rasa1a
XM_026931085.2 mRNA downstream 489375 9726395 ~ 9728449 (-) True LOC113536918
XM_026931311.2 mRNA downstream 845205 9369976 ~ 9372619 (-) True polr3g
XM_034299015.1 mRNA upstream 12297 10237636 ~ 10269049 (-) True vcana
XM_026931268.2 mRNA upstream 12297 10237636 ~ 10269049 (-) False vcana
XM_026931427.2 mRNA upstream 108087 10333426 ~ 10339194 (-) True zgc:110626
XM_026931283.2 mRNA upstream 142056 10367395 ~ 10369658 (-) True f2r
XM_026931152.2 mRNA upstream 144823 10370162 ~ 10411685 (-) True iqgap2
XR_004577119.1 other downstream 1168416 9040806 ~ 9049408 (-) False LOC113536894
TU417110 other downstream 1631898 8580900 ~ 8585926 (-) False malt1
XR_003403722.2 other downstream 2610358 7603259 ~ 7607466 (-) False card9
TU415778 other downstream 3442675 6764914 ~ 6775149 (-) True G350867
TU415368 other downstream 3865452 6346895 ~ 6352372 (-) False LOC113542569
XR_003403715.2 other upstream 148090 10373429 ~ 10411686 (-) False iqgap2
TU418361 other upstream 283744 10509083 ~ 10517205 (-) False LOC113536921
XR_004577163.1 other upstream 509751 10735090 ~ 10748838 (-) False LOC113536823
TU420171 other upstream 3496766 13722105 ~ 13724835 (-) True mrpl41
TU420169 other upstream 3496830 13722169 ~ 13724835 (-) False mrpl41

Expression Profile