RNA id: XM_034299288.1


Basic Information

Item Value
RNA id XM_034299288.1
length 2485
RNA type mRNA
GC content 0.48
exon number 7
gene id kctd10
representative False

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 1005640 ~ 1009594 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACAGGTTACGGCTCTGACGCACGGGTCTGTCCGCGCGCAGGAGGCGGGGCTTGTCGGAATACGGGTGGTTACATGGATAAATTGAACAAAACAAGGGTTTCGCGACGCAGTTTGgaagAGATGTCAGGAGAGAGTGCTGTGAGCTCGGCTGTGCCGGCTGCTACGACCCGGACCACCTCGTTCAAGGGGTCGAGTCCGAGCTCCAAGTACGTGAAGCTGAACGTGGGTGGAGCTCTTTACTACACCACCATGCAGACCCTCACCAAGCAGGACACCATGCTGAAGGCCATGTTCAGCGGCCGCATGGAGGTGCTCACCGACAGCGAAGGCTGGATCCTGATTGACCGATGCGGGAAACACTTCGGCACTGTGCTGAACTACCTGCGTGACGGCGTGGTGCCTCTGCctgagagcaggagagagacagaggagctGCTGGCTGAAGCCAAGTACTACCTGGTGCAGGGTTTAGTGGACGAGTGTCAGGCCgcactgcagAACAAAGATGCCTATGAGCCCTTCTGCAAAGTGCCCTTAGTGACATCACCTAAAGAAGAACAGAAACTCATTGCCACGTCAAATAAGCCTACCGTTAAACTCCTGTACAACAGAAGCAACAATAAATACTCCTACACCAGTAACTCGGACGACAACATGCTGAAGAACATCGAGCTGTTCGATAAGCTCTCTCTGCGCTTTAACGGGCGTGTGCTCTTCATTAAAGACGTGATCGGAGATGAGATCTGCTGCTGGTCGTTCTACGGTCAGGGCAGGAAGATCGCGGAGGTGTGCTGCACCTCCATCGTCTACGCTACTGAGAAGAAGCAGACCAAGGTGGAGTTCCCCGAGGCACGGATCTATGAGGAGACACTGAACATCCTGCTGTACGAGTGTCAGGACGGCCGCGGGCCCGACAACGCGCTGCTGGAGGCGACAGGGGGCGCTGCAGGACGCTCGCACCACCTGGACGAGGACGAGGAGCGTGAACGTGTCGACCGTGTGCGCAGGATCCATGTCAAGCGACCTGACGACCGCACACATCACCACCAGTGACCTCTAATCCTcgtttgacctctgacctgcaACCCCTGTGCCTTAATCACCCAGttccacccctccctccctctctctctctctctctctcctgtgagGGATCACAGTGCTGGCCAAGCATTCAcacagtgaaaagaaagaaagaaagagagagagagaaagaaagggagggagggagggagagaaagggagggagggagagagacgcATATAGCAATCGCTGAATTCTGAGATCCATTTCCACTCCTTATAGGTTTTAAAATATGGTCTGAAGCTGATACTTGATGCCAggttgctttctttctcttccatgCCAGCGTATTGCTCGTCTTAACGAATGTAGTTCATTTTGAACTGATGCAGAACGGCGTGTATTTGAATAGTGATGACGTGAGCAGCAGTCAGGAGTCCTAAAATCAGCACTATGGCGCTCAGCGTTGTGATTTTGTTTAAACGTCAGCACCAAACATTGCTGCAGTTAGAGCTCTAAAATGGACAGTGTTAGCTTTTATCAGGTTGTGTATTGTGCGCGTTATGTCTGAGACGGACTGTGTGTCGTGTATTAACTGCTCCTACAATTACTGATCTTCTGAGCATTGATTCTGCATGACTAGTGTCTCTGTACTGATAGATTTGTGTTTCTTGCTATTGATGTACTGAGAGtagagatggagggaaagaaGATAGTGTGACTGTTTGTCCACCAGAGGGCAGTACTGTGCTCGTTTTGCCCCTTTAGAAAGCAGGCTGTGGTCACGTTGAGCAATAACTACCCCTATAAATCATGTCAGCGATACTTGGTGATACGTACTTGTGATGTGGTGGATTACAGGAGGAAAAGCGTAGATCATTTCACCATGTGctgtttaattaattagtgGCAGGCAGGTAACATCGCCTCTCTCTGTGGGTCTGCTGAGTGAAACCCAGATGAAGTGCTGAGTGTGCGTGATTCAGTAATGCAAGGTAACTGTAAACTCTGCTGAAGGAGCATTGTCGTTTTCCCCATACAGGACAGGGTCCTGCTCTGTTGCTTAACACAAGATCACAGATCCAGGATCAGCTTGTGCTTTTCACATAACCAGTAGAGTTTATACTGAAAGTGTAGAACTGGTCCTGGATCAGCAGTAACATTACTGATCCAGAATCAGCAAGCTCTGTATTATTTTCGCTACAGTATGAAAGCTGATCCTAGATCAGCGAAGTCTGTTCAATATAATTTCACTTAAACTACGTCTcttgtttagtgtgtgtgtttgtgcagtcaCATTTTTCTGTCATTAGTTTTATTAAAGGCACATTTATGTAATCTGTATACTGTAGAGATGTTTGTACAGATGTGCACATGATTTAAGAAATGTTTTACAtacaattatatttatacactccttattgcaaataaatatttctacaaATTTTCCAAGACCAGAA

Function

GO:

id name namespace
GO:0051260 protein homooligomerization biological_process
GO:0006811 ion transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412274 lncRNA downstream 80973 917601 ~ 924667 (-) False LOC113527995
XR_004577124.1 lncRNA downstream 168302 830810 ~ 837338 (-) False LOC117595934
TU412047 lncRNA downstream 170744 833363 ~ 834896 (-) True LOC117595934
TU412034 lncRNA downstream 172710 830983 ~ 832930 (-) True G347758
XR_004577125.1 lncRNA downstream 175799 826664 ~ 829841 (-) True LOC117595935
TU412317 lncRNA upstream 27475 1036539 ~ 1037332 (-) True G347955
TU412318 lncRNA upstream 27475 1036539 ~ 1038197 (-) False G347955
TU412231 lncRNA upstream 47359 1056423 ~ 1073701 (-) False G347896
TU412322 lncRNA upstream 60654 1069718 ~ 1464481 (-) True G347959
TU412326 lncRNA upstream 74688 1083752 ~ 1102884 (-) True G347963
XM_026911375.2 mRNA downstream 24951 976948 ~ 980689 (-) True foxn4
XM_034299229.1 mRNA downstream 81017 856780 ~ 924623 (-) False LOC113527995
XM_034299299.1 mRNA upstream 77278 1086342 ~ 1108647 (-) False LOC117595672
XM_034299298.1 mRNA upstream 77278 1086342 ~ 1088963 (-) False LOC117595672
XM_034299300.1 mRNA upstream 96856 1105920 ~ 1108648 (-) True LOC117595672
XM_034299256.1 mRNA upstream 179860 1188924 ~ 1230648 (-) False tchp
XM_026911379.2 mRNA upstream 179860 1188924 ~ 1230648 (-) False tchp
XR_004577138.1 other downstream 81017 864220 ~ 924623 (-) False LOC113527995
TU411959 other downstream 637905 364006 ~ 367735 (-) True LOC113528009
XR_004577111.1 other downstream 768368 230525 ~ 237272 (-) False LOC117595925
XR_004577112.1 other downstream 769276 230525 ~ 236364 (-) True LOC117595925
TU411850 other downstream 794998 206493 ~ 210642 (-) False LOC113528266
TU412323 other upstream 67669 1076733 ~ 1079139 (-) True G347960
TU412226 other upstream 148727 1157791 ~ 1410675 (-) False G347896
TU412230 other upstream 148727 1157791 ~ 1297906 (-) False G347896
TU412381 other upstream 347504 1356568 ~ 1369462 (-) False LOC113524988
XR_003404300.2 other upstream 498551 1507615 ~ 1530394 (-) False LOC113542373

Expression Profile