RNA id: XM_034299256.1


Basic Information

Item Value
RNA id XM_034299256.1
length 2831
RNA type mRNA
GC content 0.52
exon number 17
gene id tchp
representative False

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 1188924 ~ 1230648 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TaactagaagaagaagaattctgaataatagtgtgtgattatacagcATTGTAATAGTCACTACAGATTGTGCATATGCTGTGGTTGAGCACTAGGGGGCGCTCTGAGGATTTCTATAAATAAACGCTTGCGTTCATCTCgagctgaagaggaaaaaaaaaaaaaaaaaaaaacaccaaacctGCAAAACAAACATAACCCCATCTGTTCACTCTGTCATTTAAAGTTACCTCGATCCTGCTGTTGTAGACGAGGATCTCCAGCACAGAGACGTCCTCGCCGCATGTGTCAAGatttattcccctttgctgttatgataagctccactcttctgggaaggctttccactagattttggagtgtggctgtggggatttgtcaaCATTCAGCTACAAATGCTGTCTAGctgtacagaaaagTTTTTCCCGAAGCGAAACACAAATGTTCTCCGCTCttctccactgcaaccctacTCCATCTAAGACAAATGAAGGACACGATTATTTACACAGTATTAGTCTCCACGTGAAGGAAGCGTGTCTGCAGATCCCAGTGATGACACAAGTGCGCGAGggaggaacaaaacaaaacaaaacaaaacaaaacacccgGATGTGACCCTCGGCATTCCACAGGCAGAACGATGGCATTGCCGACCCTTTCCTCGCACTGGCCCAGCCAGATCCGTCCTCTCCAGCGTCAGCTGGCGCGTCAGAGAGAACAGGAAGCGCGACGTCTCCAGCAGTGGCAGACACACTCGCAGTATTTTAAAGAGCAGCAGGTTCGCAGCAGTAAACAGGCGCACTGGAGCTCCCGCGAGTCCTATCAGCAGAGCATGTCGGCGTTTCGGCGTGAGCGTCtgcaggaggagaggaggaggagcgtgGAGGAGCGCAGGGAGCGTCTGAGGAACATGCTGCAGGAGGAGAGCGCACAGCTGGAGGCTGAGCTCCGAGCCTCCGCCCGAGACAGGAGCTCCACCCTGAGGCAGCAGCAGGAGAGGGCCGAGGATCTGCGGTCAGCCCGCGAAGAGCGCAGGAAGAAGCTCGCACAGGAGCTTCTAAAGGAACACTGGAAGAAGAACAATCCAGAACTGCGCAAGGTGGAGTCGGAGCTACATAAGGATCATGTGGTGAGCCAGTGGCAGGTGCAACAGCAGCACAAAAAACAGgtggaggaggaggccACGCAGGAGAGACGGCGTTTTGAGAACGAGTACGAGAGGAGCAGACGAGAGGCGCTGGAGAggatgaaggaggaggaggaaaggaggaaagcggaggagagagaaagaggcgaGTTCCTGCGCCAACAGATGGAGGAGCTCAAACTCAGAGACGAGGagagcCGGCGACTGCAGCAGGAGGAGGACGCTCTGCTGTCTCAGCGTTTGGAGGTGGAGCAGCTggaggaggacaggaggagaGCCGAGGAGAGCCGGAAGAAATCCGAGTTTGGACGTTTGCTGAGCCGTCAGTACCGAGCGCAGCTGAAGAGACGAGCACAGCAGGTCCAGGAGGAACTGGAGGCGGACCGGAGGATCCTGGCGGCGCTGATGGAGGGCGAGGAGGAGGAACGGCGGGTGGAGAGTGCGAGGAGGGAGAGGGCGGTGGCTGATGTGGCATGGATGAAGAGGGTTCTGGAAGAGCAGCTGCAGCTAGAGAAGGAGCGAGAGGCCGAGTTCGACCTGCTCTACAGAGAGGAGGCACAGAGGGTGTGGGATCAGCGTGAGGCTCagtgggagagggagagaagagccAGAGAGAGACTCATGCACGAGgtgcTGGGTGTGCGTCAGGAGCAGCTGCACGAGCGGATGGAGGAGAAGCGCAGGGCTCGGGAGGAGTGTGAGAGGAGGAGGGCGGAGCTTCTACAGcagctggaggaggaagaggaggagaaacgACAGCAGAGGGAGGAGCGGGAGCAGCAACGCACCACACGCATGCAAGACATCAacgctcagGTGGAGCGGAGGCGCAGGGAGCAGTGGGCGGAGCAGCAAAGACTCGAGCAGGAGGAGGCCGAGCTGAGGGAGGGGCTTAGgctgcaggaggaggagcttcagCTGGAGACAGAGAGGATGACTCGGCGTGGTTACGAGGAAAGGATTCACAGCAGACCTCGCTCAGCCTGGACATGAGGTCATGGGGACACACCCTCCGTTGTTGTTTGTGGTTTTCCGGCTGTAGCACAGTGACTGAGATCAGGTAGAGTGTGTGAACAGTAAATCGAGTGTGTGTCAGGACAGAACACTCTACACTGCAGTGTGTATTAGGTATGTGTCACTAACATTTTAGCGTGGTTCATCactaaattgttaaaaaaagaaaaaaaaaatcttcgtCAGTGACGACTGCATCTGTCCTGTTTTTAAATTTGATCAGCACTATGGGATAGTGGTTTTTTAATGACCAATGCAACACTTttttataaaaagtataataagtATATCCTGACAAGCGCCCATCAGTCCACGAGGGCGGAGCTTATATTAACGCTACTCCAGCAGTAGCTAGCCAAGTTCACGTTATGTAAAGTATTGTTGTGACATCACATGATCAAGTTTGCTTTCAGCTGACCAAATTTAACTTAAGCACCACCTCAAAAGgttatcagcacatgcctaatTAACCTAAACTACACCAGGGTGTGTTGTGCTTAGCTTTGTGTTAGATTAGCTCATGACCGTTGGCTAGCTTTATAGCCTAGCTTAATGTTTTAGAGAAATAGACGAATGAATTTACCATGTTTTGTATGACTGAAATGTTCTGTATTTATATGAGTTTGTATGTCATCACaaatttataattaaacatGCTTTTGCCAAA

Function

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412347 lncRNA downstream 11754 1174117 ~ 1177170 (-) True G347980
TU412326 lncRNA downstream 86040 1083752 ~ 1102884 (-) True G347963
TU412231 lncRNA downstream 115223 1056423 ~ 1073701 (-) False G347896
TU412318 lncRNA downstream 150727 1036539 ~ 1038197 (-) False G347955
TU412317 lncRNA downstream 151592 1036539 ~ 1037332 (-) True G347955
TU412372 lncRNA upstream 587 1231235 ~ 1231841 (-) True G348003
XR_004577150.1 lncRNA upstream 34157 1264805 ~ 1266121 (-) True LOC117595969
TU412376 lncRNA upstream 34215 1264863 ~ 1284995 (-) False LOC117595969
TU412260 lncRNA upstream 37661 1268309 ~ 1271159 (-) True LOC113524981
XR_004577145.1 lncRNA upstream 79041 1309689 ~ 1311494 (-) True LOC117595965
XM_034299300.1 mRNA downstream 80276 1105920 ~ 1108648 (-) True LOC117595672
XM_034299299.1 mRNA downstream 80277 1086342 ~ 1108647 (-) False LOC117595672
XM_034299298.1 mRNA downstream 99961 1086342 ~ 1088963 (-) False LOC117595672
XM_026911376.2 mRNA downstream 179330 1005640 ~ 1009594 (-) True kctd10
XM_034299288.1 mRNA downstream 179860 1005640 ~ 1009064 (-) False kctd10
XM_034299350.1 mRNA upstream 6223 1236871 ~ 1240049 (-) True LOC117595980
XM_034299263.1 mRNA upstream 21222 1251870 ~ 1257942 (-) True LOC117595953
XM_034299311.1 mRNA upstream 39487 1270135 ~ 1278867 (-) False LOC113524981
XM_034299351.1 mRNA upstream 63226 1293874 ~ 1297808 (-) True LOC117595981
XM_034299352.1 mRNA upstream 83851 1314499 ~ 1316387 (-) True LOC113528146
TU412323 other downstream 109785 1076733 ~ 1079139 (-) True G347960
XR_004577138.1 other downstream 264301 864220 ~ 924623 (-) False LOC113527995
TU411959 other downstream 821189 364006 ~ 367735 (-) True LOC113528009
XR_004577111.1 other downstream 951652 230525 ~ 237272 (-) False LOC117595925
TU412381 other upstream 125920 1356568 ~ 1369462 (-) False LOC113524988
XR_003404300.2 other upstream 276967 1507615 ~ 1530394 (-) False LOC113542373
XR_003404299.2 other upstream 296944 1527592 ~ 1530388 (-) False LOC113542373
XR_004577143.1 other upstream 298130 1528778 ~ 1530394 (-) False LOC113542373
trnak-uuu_19 other upstream 367822 1598470 ~ 1598542 (-) True trnak-uuu_19

Expression Profile