RNA id: XM_026916212.2


Basic Information

Item Value
RNA id XM_026916212.2
length 1367
RNA type mRNA
GC content 0.45
exon number 2
gene id tal2
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 849386 ~ 851691 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tcatcaggGCGAATACAACACAGCTGTAAAATTCATAAGCCTCCACTCGTACTGCCGTCCTccccctccatccctccatccctccatccctccctctccctctccgtctattctctcttttctctgagAGCATGGCTGTGTCAGAGCTCAGAGACTCTGTGAAGCTCACAGTGAGAGGACACTTTAGCACTCTGTTTTTTCTGAGACAACACACTCCCAGcgccaTCATGACGCGTAAGGTGATCAGTAACAGTCGCGAGCGCTGGCGTCAGCAGAGCGTTAACACGGCGTTTGCGGAACTCAGGAAGCTCATCCCGACTCATCCTCCTGAGAAGAAGCTGAGCAAGAACGAGATCCTGAGACTGGCCATGCGTTACATCACCTTCCTGCTCACGCTGCTGGAGAACCAGAGAGACGGAGTGACAGAACACTCGTCCTCCAccctcatcacactcatcacggGGAACATGAGGAACCTCAGCTCacatacagaaacacactcGCCTGGATCCAGCAGTGACGGTGCAGAGACCTGGTAGAACCAACACCACAGTCTGGAGAACTTAAAGAACCTGCTGCAGCTGCACAAACTGTACGAAAAAACTGCACTGACTATATGAGCTCTAGATTCTTTTGTATTAATTTCACAGACAGGATCCAGAACACTAGAACCTTTCTAATgtgtttttacagaaaacttacttTACAGAAAATCTCACACCTCTGCAGTCAGTCTATCAATCTAGAACCTCTGCAGGAGCTGCACGAACCATCCAGAACCATCTGTAATTCCAGACAGAACGGAGAAGCTTTGCTCCAGCATAATGCAGAGTTTTATAATGAACCATTTATAATGAACAGAACAGCCAAATGGAACCTGTGCTGTAAATTTACAGGCACAATCTAGCACCGCTGCGGTTCTGTAGAAAACCTGCAGCCTCTgcgtaaatacacacacaatctagAACCTCTGCGATATTTACAAAGAGAGAATCTAGGTCCTTTATTAGAACTGTAACCTCTACATGCTGAAACACATAgaacctctcacacacacacacacacacacacacacacaagaacccTCCCCTCTCACACAGAACTTTACTATAAAGTTCAGTGAAGTATTAGACAGGATTTAGCAGATTTTTAAGGTTAGGTCTCTGACAGTGTTCTGAAAACGTTGTATTAATGTTGCAGCAGCGTTGTAGGAacgtttaaaacatttatagaaaTGCAAAATTCAGAAAACTTTTGAATCTACGCCGAGTTTAAATCTGTCCATGATCTCGTGCAACATTTAGAGTTtgttatttagtatttatggtatttatttattctcacgATGgcattgtttaataaagaaa

Function

GO:

id name namespace
GO:0007420 brain development biological_process
GO:0021514 ventral spinal cord interneuron differentiation biological_process
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577124.1 lncRNA downstream 12048 830810 ~ 837338 (-) False LOC117595934
TU412047 lncRNA downstream 14490 833363 ~ 834896 (-) True LOC117595934
TU412034 lncRNA downstream 16456 830983 ~ 832930 (-) True G347758
XR_004577125.1 lncRNA downstream 19545 826664 ~ 829841 (-) True LOC117595935
TU412178 lncRNA downstream 82790 766065 ~ 766596 (-) True G347868
TU412274 lncRNA upstream 65910 917601 ~ 924667 (-) False LOC113527995
TU412216 lncRNA upstream 67693 919384 ~ 1389230 (-) False G347896
TU412222 lncRNA upstream 73798 925489 ~ 1359907 (-) False G347896
TU412225 lncRNA upstream 73798 925489 ~ 1467707 (-) True G347896
TU412228 lncRNA upstream 73798 925489 ~ 1701550 (-) False G347896
XM_026916266.2 mRNA downstream 4910 837561 ~ 844476 (-) False LOC113528030
XM_026916264.2 mRNA downstream 7506 837561 ~ 841880 (-) True LOC113528030
XM_026916267.2 mRNA downstream 8332 837561 ~ 841054 (-) False LOC113528030
XM_034299169.1 mRNA downstream 190488 652989 ~ 658898 (-) False pgam5
XM_034299168.1 mRNA downstream 190488 652989 ~ 658898 (-) True pgam5
XM_034299228.1 mRNA upstream 5089 856780 ~ 924649 (-) False LOC113527995
XM_034299229.1 mRNA upstream 5089 856780 ~ 924623 (-) False LOC113527995
XM_034299230.1 mRNA upstream 5089 856780 ~ 924623 (-) False LOC113527995
XM_034299226.1 mRNA upstream 5089 856780 ~ 924623 (-) False LOC113527995
XM_034299227.1 mRNA upstream 5089 856780 ~ 924623 (-) True LOC113527995
TU411959 other downstream 481651 364006 ~ 367735 (-) True LOC113528009
XR_004577111.1 other downstream 612114 230525 ~ 237272 (-) False LOC117595925
XR_004577112.1 other downstream 613022 230525 ~ 236364 (-) True LOC117595925
TU411849 other downstream 638744 206493 ~ 210642 (-) False LOC113528266
XR_004577138.1 other upstream 12529 864220 ~ 924623 (-) False LOC113527995
TU412323 other upstream 225042 1076733 ~ 1079139 (-) True G347960
TU412226 other upstream 306100 1157791 ~ 1410675 (-) False G347896
TU412230 other upstream 306100 1157791 ~ 1297906 (-) False G347896
TU412381 other upstream 504877 1356568 ~ 1369462 (-) False LOC113524988

Expression Profile