RNA id: XM_026916267.2


Basic Information

Item Value
RNA id XM_026916267.2
length 2250
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC113528030
representative False

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 837561 ~ 844476 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACGCAATACACGTTAGAGTTCAGACTTCTGATGGTATCTAACTTCTGCTCTTTCTCATAAGCGCCATATTACACCACTCCACTTTTCTGCAACCTGTACACTCAGCACTTACACCTGGTCCAGGTGAAGCTCCCAGTCTAGCCAGTTCCACATTCAATCATCAGAGGACCCAAATTTCATGTCTCCATATCTGGCTGTAAAACAGCTTttggttgtttgattttataTGATTTACAATATTTAGATTACGTCATACATGGGAGGGGCTGAGCAGGTTAAGTTGTGTGGGTTTGTATGTGGCAGCAAAAATCCAGGGATATAtggaacataaaaaaaacaaaaaaaaacacaagcctGATTTTCAGCGACAAAAATCTCACATCATAAAGGAATTGTTTGGTCGTGAGATGAGATCAGACAATGATCAGATCAGAGATCAGAGAATGTAttagtgtgtataatgtgtgttatCTGTGGCCAGTTTCGTGCTGCTGTGAAAAAGACAGCTGACGACAAATGactgtcagtgtgagaaattAGTGAATAAATCAGAGTGAGCGACGTTCTTCTAGAATCCACCGACAGAAGGACAGCAAACGCACAGCACAGTAGTGGCGATGGAGAAAGACTCGATATCTCCGGCTTACTTTGAAGAATGTTCGGGTTCATGCGAGCCCGTTTCTGCACGAGCTGATTTCCGATGACGGGAGCAGAACGTGgtgattttctttaatcgcagatctaccgttagaggatcttcatggTGTAATCTGACACAGAGAACACACTTTACAGGTAAACCCACGAGTTACTGTGAGATGATGGGCCGAGCTGATATCTGGTTAATCAGAGCTTACTGGGACTTTGAGTTCCCACGACCTCTCCTACCAAACTTCATCTATGTTGGAGGACTGCACTGTACTCCTGCTGAACCTTTACCaaaggatatgGAGGAGTTTGTACAGAGCTCTGGAGATGATGGTGTTGTGGTGTTCACTTTGGGAACGCTGATCACAAACCTCACCATGGAGAAGTCCAACATGATCGCCTCAGCTCTCGGACAGATCCCTCAgaaggtggtGTGGAGTTACCGAGGAGAGAAGCCAGACACTCTGGCTCCAAACACCAGGATTTATTGCTGGATTCCTCAAAACGATTTACTGGGTCATCCCAAAACCCGAGCGTTTGTCACCCATGGTGGCTCGAACAGCCTGTATCAGGCCATTTACCACGGCGTGCCCATGGTGGGGATCCCGCTGTTCGCCGATCAGCCGGACAACATGGTGCACGTGCAGGCTAAAGGCGTGGCCATCGTCCTGGACTTCAGCAGCATGCAGACGCAGGACCTGGTGGACGCTCTTACAGCCATCATCCATCAACCAGAGTACAAGGCGAGCGCCCGGCGTCTGTCCCAGATCCACCACGAGCGTCCCGTCAAACCTCTGGACGAGGCAGTGTTCTGGATCGAGTACGTGATGAGGAATAAAGGTGCTAAACACCTGCGTGTAGCTGCTCATCACCTCACCTGGTACCAGTACTACCTGCTGGATGTGCTGAGCTTCTTCATCCTCATACTCGCTCTAATCCTCTACATCTTTATCAAAATCTGCAGAGTCGGCCTCTGGCTCATCAAATCAACACTAAATCACAAAAGAAAGCTAGAGTGACGCTCCtcacgtgtctgtgtgtgtcctttaCCTCATTCACACGGTGACTCATTTACCGTGTTCGATTACagtacacacaatcacacaatattaaacactgtttaacactttaacattttatcacaattatgccttttttttctttttgcattctCTTTTTCTGCATTTGTGTCCACTTCGTCATCCACGGTGTAGTAATATCAcaagcaaaatgttttttgttttctgaatttTGAAGTAAATGTAAAGATGAATTTCAAATTcgaatgaaaaatatttataaatgtctgGAATGAAACTGACTTTTTTTGGACTAAAGTCTATTGTATATGTTTTgtgcttctttttctctttattgcTACTCCTgttctttttattattcttaccataaagaaataaagcaagaCCATTGTTTTGCGTGAATATTTATAATTCCTGCTCCAGACACGTTTCAGGGTGTATGCCTGCCTCAGGCTGGTCTGTCTGAGGTGAGATGGATGATCTAACATGTCTGCTGTTTAACTAGTGTAAGCAGCTAGCTAAACAATGTGCAGCCTAAATAAACTAGATTTCAAATCCCCA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577124.1 lncRNA downstream 223 830810 ~ 837338 (-) False LOC117595934
TU412047 lncRNA downstream 2665 833363 ~ 834896 (-) True LOC117595934
TU412034 lncRNA downstream 4631 830983 ~ 832930 (-) True G347758
XR_004577125.1 lncRNA downstream 7720 826664 ~ 829841 (-) True LOC117595935
TU412178 lncRNA downstream 70965 766065 ~ 766596 (-) True G347868
TU412274 lncRNA upstream 76547 917601 ~ 924667 (-) False LOC113527995
TU412216 lncRNA upstream 78330 919384 ~ 1389230 (-) False G347896
TU412222 lncRNA upstream 84435 925489 ~ 1359907 (-) False G347896
TU412225 lncRNA upstream 84435 925489 ~ 1467707 (-) True G347896
TU412228 lncRNA upstream 84435 925489 ~ 1701550 (-) False G347896
XM_034299169.1 mRNA downstream 178663 652989 ~ 658898 (-) False pgam5
XM_034299168.1 mRNA downstream 178663 652989 ~ 658898 (-) True pgam5
XM_026917111.2 mRNA downstream 260125 523807 ~ 577436 (-) True LOC113528517
XM_034299346.1 mRNA downstream 321289 475494 ~ 516272 (-) True LOC113528156
XM_034299077.1 mRNA downstream 381471 440336 ~ 456090 (-) False atp8b5a
XM_026916212.2 mRNA upstream 8332 849386 ~ 851691 (-) True tal2
XM_034299228.1 mRNA upstream 15726 856780 ~ 924649 (-) False LOC113527995
XM_034299229.1 mRNA upstream 15726 856780 ~ 924623 (-) False LOC113527995
XM_034299230.1 mRNA upstream 15726 856780 ~ 924623 (-) False LOC113527995
XM_034299226.1 mRNA upstream 15726 856780 ~ 924623 (-) False LOC113527995
TU411959 other downstream 469826 364006 ~ 367735 (-) True LOC113528009
XR_004577111.1 other downstream 600289 230525 ~ 237272 (-) False LOC117595925
XR_004577112.1 other downstream 601197 230525 ~ 236364 (-) True LOC117595925
TU411849 other downstream 626919 206493 ~ 210642 (-) False LOC113528266
XR_004577138.1 other upstream 23166 864220 ~ 924623 (-) False LOC113527995
TU412323 other upstream 235679 1076733 ~ 1079139 (-) True G347960
TU412226 other upstream 316737 1157791 ~ 1410675 (-) False G347896
TU412230 other upstream 316737 1157791 ~ 1297906 (-) False G347896
TU412381 other upstream 515514 1356568 ~ 1369462 (-) False LOC113524988

Expression Profile