RNA id: XM_026916564.2


Basic Information

Item Value
RNA id XM_026916564.2
length 1252
RNA type mRNA
GC content 0.52
exon number 3
gene id fgf10b
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 257527 ~ 260223 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtgtgtgtgtgttctctccgCAGTCATGCTCCCCCCGGTGCGCTGCAGTGATGACGGTGACATGGAGCGCGAGTAGCGGCTGGTCTCTGTGTGCGCTCGCGGCGCTCGTGATGGCGCTGATCGGCGCGCGCACCGTCACCTGCCGCAGCGCGCGAGAGCCTCAGCACGCGCTCCCGGGCATCACCGCAAacaccaacagcaacaacaacaacagctccagctccagctccagctcgaACTCCTCCATCTCCGCTGCACCGGCACGGCGCGCGCGCAGTTACCCTCACCTGCAGGGCGACACGCGCCGCCGGAAGCTCTACTCTTTCCAGAGGCTGTTCCTGCGGATAGACGGCACCGGGGGAGTGAGCGGCACCAGGAGCAAAGACGACGCGCACActatTCTGGAGATCACGTCTGTAGATGTGGGAGTGGTGGCCATACGGAGCCTGACCACCGGTTATTACCTCGCCATgaacaggagaggagaggtGTACggagagagagaGTACAGTGTGAACTGTTGGTTAAAGGAGCGCATCGAGGAGAACGGCTACAACACGTACGCCTCGGCGCAGTGGAGGAAACGACACAGAGCGATGTTCATTAGCCTGAACGCTAATGGGAAACCGCTGCGtggcagaaaaacacacaggaggaacacaaacacacacttcctgcccATCGCCGTGTGAGTGTGAGACGAAACCTCACCGAAGTGTAATAAAGGACCAAAGAGAAGCTCGGTACTGAGGGACACGGAGGAAACCTGAAAACTCAGAACCTGGAATTCTGAAGTTAGGATTCAGAACCTGAAAACTCAGAACATGAAAATTCAGAACCTGGAATTCTGAAGTTAGGATTCAGAACCCTGAAAACTCAGAACCTGGAATTCTGAACTTAGGATTCAGAACCTGAAAACTCAGAACCTGAAAACTCAGAACCTGGAATTCTGAACTTGGGATTCAGAACCTGAAAACTCAGAACATGAAAATTCAGAACCTTAGATTCAGAACTGAAAACTCAGAACCTGGAATTCTGAACTTAGGATTCAGAACCTGAAAACTCAGAACCTGAAAACTCAGAACCTGGAATTCTGAACTTAGGATTCAGAACCTGAAAACTCAGAACCTGAAAACTCAGAACCTGGAATTCTGAACTTAGGATTCAGAACCTGAAAACTCAGAACATGAAAATTCAGAACCTGGAATTCTGAAGTTAGGATTCAGAACCTGAAAACTCAGAACATGAAA

Function

GO:

id name namespace
GO:0003342 proepicardium development biological_process
GO:0003343 septum transversum development biological_process
GO:0003015 heart process biological_process
GO:0060047 heart contraction biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU411853 lncRNA downstream 51234 175023 ~ 206293 (-) True G347623
TU411860 lncRNA downstream 116470 139214 ~ 141057 (-) False LOC117595978
TU411888 lncRNA downstream 118714 120309 ~ 138813 (-) True G347652
TU411870 lncRNA downstream 222749 17440 ~ 34778 (-) True G347634
TU411951 lncRNA upstream 68691 328914 ~ 329608 (-) True G347703
TU411952 lncRNA upstream 73019 333242 ~ 333755 (-) True G347704
TU411911 lncRNA upstream 94104 354327 ~ 355340 (-) True G347672
XR_004577162.1 lncRNA upstream 104042 364265 ~ 367739 (-) False LOC113528009
TU411979 lncRNA upstream 135144 395367 ~ 397450 (-) True G347723
XM_034299336.1 mRNA downstream 2983 238817 ~ 254544 (-) True mybbp1a
XM_034299098.1 mRNA downstream 20255 230732 ~ 237272 (-) False LOC117595925
XM_026916717.2 mRNA downstream 30823 221429 ~ 226704 (-) True LOC113528265
XM_026916718.2 mRNA downstream 31080 221429 ~ 226447 (-) False LOC113528265
XM_026916720.2 mRNA downstream 46822 205480 ~ 210705 (-) False LOC113528266
XM_034299337.1 mRNA upstream 1416 261639 ~ 282406 (-) True adamts12
XM_034299121.1 mRNA upstream 113227 373450 ~ 385400 (-) True lrp13
XM_034299345.1 mRNA upstream 158084 418307 ~ 438443 (-) True rusc2
XM_034299076.1 mRNA upstream 180113 440336 ~ 469953 (-) True atp8b5a
XM_034299077.1 mRNA upstream 180113 440336 ~ 456090 (-) False atp8b5a
XR_004577111.1 other downstream 20255 230525 ~ 237272 (-) False LOC117595925
XR_004577112.1 other downstream 21163 230525 ~ 236364 (-) True LOC117595925
TU411849 other downstream 46885 206493 ~ 210642 (-) False LOC113528266
TU411850 other downstream 46885 206493 ~ 210642 (-) False LOC113528266
TU411899 other downstream 55566 197392 ~ 201961 (-) False LOC117595911
TU411959 other upstream 103783 364006 ~ 367735 (-) True LOC113528009
XR_004577138.1 other upstream 603997 864220 ~ 924623 (-) False LOC113527995
TU412323 other upstream 816510 1076733 ~ 1079139 (-) True G347960
TU412226 other upstream 897568 1157791 ~ 1410675 (-) False G347896
TU412230 other upstream 897568 1157791 ~ 1297906 (-) False G347896

Expression Profile