RNA id: XM_026917111.2


Basic Information

Item Value
RNA id XM_026917111.2
length 1381
RNA type mRNA
GC content 0.55
exon number 12
gene id LOC113528517
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 523807 ~ 577436 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTGCTCCGGCTCTCCGCCTCATCATGAGCTCACCTCAGTGCGGGAGAATTCCTCTCACCTCCGCGCTCTGGAGCACTTCAGCAAGCTGACACTCATGTCCGGATTATTCCTCACAATCGGgttaaagtttttaaagttgTTGAGTGAAGTGACGCGGTTTGTTTGGGGACATAAATCTCAGCCTGCGTTATGTCACTACTCTGCGTCCGAGTGAAAAAGGCCAAACTCCACGGAGCTCCAGatacatttaatgtctaTGTGACTCTGAAAGTTCAGAATGTTAAGAGCACGACCATCACAGTGCGTGGAGACCAGCCATGCTGGGAACAGGACTTCATGTTtGAGATTAACCGTTTGGATCTGGGGCTGGTGGTGGAGCTGTGGAACAAAGGTCTGATCTGGGACACCATGGTGGGAACGGCCTGGATCCCCCTCAACACCATCCGCCAATCAGATGAGGAGGGTCCGGGTAAGTGGATCATGTTGGACTCGGAGGTCCTGATGAAGGCCGATGAGATCTACGGCACTAAGAACCCGACTCCTCACCTGGTGCTGCTGGACACGCGCTTCGAGCTTCCCTTCGACATTCCGGAGGAGGAGGCGCAGTACTGGACGAAGAAGCTGGAGCGCATCAATGCTATGAGGATACACGATGAGgATGAAGAGCGAGGAATGCCGGTCCCCTCCGTCCCTTCACAGTGCTGCAGCTGGACTTACTTTGGATGGAGTGAGCAGCAGACTCTAGATGATCACGACAGCGCGGTGGACGACAGAGACAGCGACTACCGCAGCGAGACCAACAGCCGTCCTCCACGATACCACACCACGGCCCAGCCCAATTCTTCTGTCCACCAGTACCCCATGAGCCGAAGGACACGTCCACAAGCCGCATCCAAAGAGTCCGGAACCGAGTCCATACACAGCTATGAGCTGGACTACAGGGAAGGAAGGGGACCGAGcccAGAGGACAGCTCTCGGTTCGGCTCGTCTGGTAACCTGAGCCAGGCCAGTTCCCAGTTCAGCTCTGAACCAGAGGAGAGAAGTGACCCAGAGAACCAGACCCGACCTCCTGTCACCACCCGACCTCGGCTGTCCTCGGAGGATGTAGAGAAAGGTGAAAGAGAGACTCGAACGAGCTCacaggagaaaaaagaagagaatgtCCTTCCTGCCCAGTCAGAGAGttCTTTCAAAATCGATTCTCCTCCGATCGCCCCGTCCCGCCTCCGCTGGCTAAAGGCCATCAACAAAGTCCGAGTTCACCTGCACCAGCAGCAGTGAACTCGCTCCAGTCCAGCGTCCAGAGAGGAGAAATGCATCAACTCAGCTCTGCAGtaaatccacttcagggtggctTTTTACTACACCAGGTCCTTACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU411984 lncRNA downstream 57552 418354 ~ 466255 (-) False rusc2
TU411979 lncRNA downstream 126357 395367 ~ 397450 (-) True G347723
XR_004577162.1 lncRNA downstream 156068 364265 ~ 367739 (-) False LOC113528009
TU411911 lncRNA downstream 168467 354327 ~ 355340 (-) True G347672
TU411952 lncRNA downstream 190052 333242 ~ 333755 (-) True G347704
TU412035 lncRNA upstream 57323 634759 ~ 638280 (-) True G347759
TU412100 lncRNA upstream 65550 642986 ~ 643487 (-) True G347821
TU412114 lncRNA upstream 95641 673077 ~ 676630 (-) True G347833
TU412129 lncRNA upstream 131118 708554 ~ 715445 (-) False G347847
TU412131 lncRNA upstream 131118 708554 ~ 715445 (-) True G347847
XM_034299346.1 mRNA downstream 7535 475494 ~ 516272 (-) True LOC113528156
XM_034299076.1 mRNA downstream 53854 440336 ~ 469953 (-) True atp8b5a
XM_034299077.1 mRNA downstream 67717 440336 ~ 456090 (-) False atp8b5a
XM_034299345.1 mRNA downstream 85364 418307 ~ 438443 (-) True rusc2
XM_034299121.1 mRNA downstream 138407 373450 ~ 385400 (-) True lrp13
XM_034299169.1 mRNA upstream 75553 652989 ~ 658898 (-) False pgam5
XM_034299168.1 mRNA upstream 75553 652989 ~ 658898 (-) True pgam5
XM_026916266.2 mRNA upstream 260125 837561 ~ 844476 (-) False LOC113528030
XM_026916264.2 mRNA upstream 260125 837561 ~ 841880 (-) True LOC113528030
XM_026916267.2 mRNA upstream 260125 837561 ~ 841054 (-) False LOC113528030
TU411959 other downstream 156072 364006 ~ 367735 (-) True LOC113528009
XR_004577111.1 other downstream 286535 230525 ~ 237272 (-) False LOC117595925
XR_004577112.1 other downstream 287443 230525 ~ 236364 (-) True LOC117595925
TU411849 other downstream 313165 206493 ~ 210642 (-) False LOC113528266
XR_004577138.1 other upstream 286784 864220 ~ 924623 (-) False LOC113527995
TU412323 other upstream 499297 1076733 ~ 1079139 (-) True G347960
TU412226 other upstream 580355 1157791 ~ 1410675 (-) False G347896
TU412230 other upstream 580355 1157791 ~ 1297906 (-) False G347896
TU412381 other upstream 779132 1356568 ~ 1369462 (-) False LOC113524988

Expression Profile