RNA id: XM_026930995.2


Basic Information

Item Value
RNA id XM_026930995.2
length 2508
RNA type mRNA
GC content 0.45
exon number 12
gene id LOC113536867
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 8764216 ~ 8773109 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGAGACATAGCCAGAGTGTCCATGAGCTGTTTGATAAAGGAAACGGAGCAAAAATTCTTACCCAAAGTAGGACAGGGAAGAGGACACCTACATACTTCCACAGACTGGCCCTGGACAGTGTGATTACCAGCAAAGGAAGTCTCGTTCTGCTAAATGGACCTAATGCTATTGAGGTTCACAAGCCCAGGAAATTGAGCCAGCTGGTGAATGGAGCCCATCTGACTGATGTTTACCTGCCAGCCATCACAGAAAAGACGTCAAACCTGCAAGCAGCGAGAGTAAATCTCAGCCAGTCCTGTCCACATGTGTACAGCAGCAGACGTCGCAGATCCACCTCATCTGTCATCTCGCAAAGAGCCTCAGACTTCAGTGCTAGAACGAATTATTTAAAGGAACAAAAAGAGTCAAGGAAGTCTAATGTCTTAGTGACAATGCTGTACCTGGGCCAGAGGAAGCCTGGGACCACCCAGGATGACATGAAAGTGCTCCAACAGAAATGCGGAGGGGAGAACATCTGTGTCTTTAAAGGATCTGTTCAGCCTGGAGAGCAGTTCCAGTTTATTTCTCAGAGACACCTTGGCTACCCATTCAGTGCCACCTTCTACGTCAATGGAATAATGGCCGGTAGAATAAGTTCATGCTGTGAGTATCGTTACACCCCCGGCTTTCAGCAAGGCCGCAAGAGCTGTTTCAGACTGATCCGACTGAGTGGAGGGAAACCCTGCTATAAATGTGTGAATTCTAGACATGGTATTGGCAATGAACCAGAAGATATTATTCATCACAGTATCCACACTCTCAAATCTCATGAAGGTAACATGGAGTCTTGCCCTTCTTCCCCTTTATTCATCCCTACTGGAATGGAGAGATCTGTACAGAGAACAAGAAAGCTTCCCAAAGATGCCAGCAAGGTGCTAACAGATAGTGAAGATATGAATGACAGCATGACAGACAGAAAACGATACAAGCGACAGAAGAGGCGTTATGGCCGGCGAAGAGACAGCAATGGCTCTGAGGCATCTCAATACAAAAGAGACACTAGAGAGGATGAAACCAAGTCAACAGTTTTGAATAGCTCAATACCTCATCTGGAAAAATCAAAGAATGTGAAGGAACATGGCAAAGAGAAGCCAAAGACCAGCAATAAAGACAAagATTTATTACAGGACAGAGAAGCCCTGAGTAAGCAAATTGGAAAGGAAAAGCTAGATCCTCGGGAATCAAATGGCAAAAGCAGAAACGGGGATAGACTGAGAGACTTCTATGAAGAATGTGTTGAAATGAGCACTGGTCTGGAATCTGGCCTAGAACAACACAAGTGGTTCAAAGCAAACAAGTTTGAGAGGAATAAACTCAGAGAGCAGCTCACTTTGGGCCCCCACCCTAATGACTCAGCTACTGAGTTGGAACTCAGTGAAGAGAGTGATAATGCTGTCCATTCAAAGTCAGGGAAGCCCAGGACTGATATGAAAAATCAAGAGATCCCAGAGAATGACGCATTTgagaaaaaacaagaactgCAAAAAAAGCTGGATGCTATGCTGGAGGTGTTGAATACATCAGATGAGGTGGAGCTGGTGCTGAGGAATACAGGAGTGACAGATGAACTGCTACTGAGTTTTGTGGCAGCACTGAAGAATAGCCTATCTGAAGTCACACTGGTCAACCTCAATCTCAACCATATCGGACCTCTAGGAGTTCATGGACTGCTGGACCTTCTACAGGCCAAACCAGAGATCAAGGGACTACTGTTGTTTGGAAATCATCTAGGCGATGTAGGAGTTCAGGTCCTGCTTAGTGGTGTGGCTGATCTTCAAGTAAAAACAGCAGCATCACCAAGAATGCCAGTATATCCAAGACAATTCTACCTTTCTGAGCCAAGCTTTGCACTCATAGAGCTGGACTTGGGTGGAAATGGGATTGGCAGTGAGGGACTGAGAGTATTAGGCACCTTTATAAGGTATCACTCCCAGTTGCAATATCTGGGCCTGGCCCAAACATGTTGCTCTAGCATGGAGGCCTGGTATGTCTTTTTTGAAAGTCTGAAGGTAAACAATAAACTCACCCACATCATTCTAGATGAGAACAACCTGGGAGACCAAGGGGTCAAACTATTTGCTGAGGCTCTTCAAATCAATGAAAGCTTGCGGAAAATAGACTTGGACCGCAATAATTTTGGTGAGGTTGGAGGACATGCTCTCCTTGAGGCACTCTCCATAAGCCAGTGTTCTCTCGAGCACTTAAGCTTGGAGCAGAACTACATCAGTACAGAACTGATGAGCAAATTTCAGGATGTGGTTAAGACTAGTGATGTACGTACTACTTTAAAAGCTTAGACCTGGAAATTGTACTCTAAATACCAGAAGACAAACTGTAAAAGAACTGGAGCCCGAGCCTCACTAAAATGGGAAGCTGAGTAACTTTGTGACCTGTGTGTGGGTGGCTTCCAACAAACCCAAATGAATTGCTTTATTCAGAGTTCCATCTGCTTGGCTGTTCAATATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU417175 lncRNA downstream 30348 8731083 ~ 8733868 (-) True G352068
TU417115 lncRNA downstream 122735 8640942 ~ 8641481 (-) False sh2d3cb
TU417139 lncRNA downstream 135124 8628413 ~ 8629092 (-) True G352036
TU417138 lncRNA downstream 135895 8627430 ~ 8628321 (-) True G352035
TU416987 lncRNA downstream 209998 8553721 ~ 8554218 (-) False hint2
XR_003403714.2 lncRNA upstream 198523 8971632 ~ 8976888 (-) True LOC113536901
TU417671 lncRNA upstream 409039 9182148 ~ 9184754 (-) True G352491
TU417681 lncRNA upstream 423674 9196783 ~ 9200688 (-) True G352498
TU417667 lncRNA upstream 433319 9206428 ~ 9210530 (-) True G352487
TU417696 lncRNA upstream 559657 9332766 ~ 9332971 (-) True G352512
XM_026931425.2 mRNA downstream 16507 8682132 ~ 8747709 (-) False col27a1b
XM_026931424.2 mRNA downstream 16507 8682132 ~ 8747709 (-) True col27a1b
XM_026931394.2 mRNA downstream 109604 8641461 ~ 8654612 (-) True sh2d3cb
XM_026931393.2 mRNA downstream 112478 8641461 ~ 8651738 (-) False sh2d3cb
XM_026931396.2 mRNA downstream 112611 8641461 ~ 8651605 (-) False sh2d3cb
XM_034298980.1 mRNA upstream 129073 8902182 ~ 8907720 (-) False LOC113536953
XM_026931141.2 mRNA upstream 129073 8902182 ~ 8907720 (-) True LOC113536953
XM_034298979.1 mRNA upstream 134687 8907796 ~ 8934237 (-) True camsap1b
XM_034298947.1 mRNA upstream 166142 8939251 ~ 8978655 (-) True notch1b
XM_026931453.2 mRNA upstream 230356 9003465 ~ 9005817 (-) True LOC113537127
TU417110 other downstream 178290 8580900 ~ 8585926 (-) False malt1
XR_003403722.2 other downstream 1156750 7603259 ~ 7607466 (-) False card9
TU415778 other downstream 1989067 6764914 ~ 6775149 (-) True G350867
TU415368 other downstream 2411844 6346895 ~ 6352372 (-) False LOC113542569
XR_004577155.1 other downstream 2643257 6057235 ~ 6120959 (-) False pappab
XR_004577119.1 other upstream 267697 9040806 ~ 9049408 (-) False LOC113536894
XR_003403715.2 other upstream 1600320 10373429 ~ 10411686 (-) False iqgap2
TU418361 other upstream 1735974 10509083 ~ 10517205 (-) False LOC113536921
XR_004577163.1 other upstream 1961981 10735090 ~ 10748838 (-) False LOC113536823
TU420171 other upstream 4948996 13722105 ~ 13724835 (-) True mrpl41

Expression Profile