RNA id: XM_026931003.2


Basic Information

Item Value
RNA id XM_026931003.2
length 2518
RNA type mRNA
GC content 0.41
exon number 5
gene id tor2a
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 8634520 ~ 8640745 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TACACGGACTTTGAGACGCCCCTAGCGGCTAAATAAATCCTCCATCCTCTAACTCGCCATGGACCTGTGCTGTGACAGACTTATAATGTTATTGACAATTTTCTTGATATATTGTATATCCATAAGTGATTGTTTTGAGATGAAAACGATATATTGCACCATATCTGACAGCTGTGACTGCGACTTTAAACCAAACATACAAGGCTTGGAGTGGGACCTTTATAAAAATCTGTATGGACAACATCTGGTGCAGGACATTGTGTCCGAGTCAGTGGCGAGCTTCCTGCAGAAGCAGAATCCAGACAGGCCGCTGGTTCTTTCCTTCCACGGAGCATCAGGCACTGGAAAGAGCATGGTGAGCGCCATGCTGGCCCGTCACCTGTACGGCACCTCCATGGGCAGCCCTTACATCCATCAGTACATCCCCACACTGCACTTTCCCCTCGCTGATCGTGTCAAGCAATACAGgTCAGATTTGAAGCACTGGGTACAGGGGAACCTCACAGCCTGTGCTCGCTCTGTTTTCATCTTCGATGAGATGGAGAAGATGCCTCCTGGAGTGATTGATGTTCTGGAACCATTCCTCGGGCCTTCGCATGTTGTTTTCCAGACCAACTACCGCAAGGCcatctatatttttattacTACGGCAGGTCAGGAAGTCATTAACAAAGTGGCCCTGGAGAACCGGCAGGCAGGACAAGACAGAGAGGAAATTCAGGCAGAGCAACTGGAGGAGGCTATTGCAGACTCTGTATACAACAATAAAAAGAGTGGATTCTACCATTCGAAAATAATCTCTGCAAAGAGAATAACCCGCTTTGTGCCCTTTCTGCCCTTGTGTCGGCGACACGTGGAGCGCTGTGCCCAGCGGGAACTGTGCCAGCGTGGCGAGTGCCAGCGCAGAGACGTGTCAGCGGCAGTAGGGGGCGCCATGTCCTACACACCACAGGTTGGGCAGCACTTCTCAAGCACCGGCTGCAAGCTGGTACCTGCTAAAGTCAATCTCTTCCTATGAGCCATGGGAGTGATAGGAGTGGACATAACAGGAACATCGGACCAGCTGGTGTTCATCTGTGCCAGTGCGCAGGAGCAGACTTTGCTTTTATAAGGACACTGGTTCTGCATGAACAGGCCCAAAAATACAGCAGAAGTACAGCTCTGACGACTGGCTCTAAGGTAAGTGTACAGGAACGAATTAAATGCTGACTATCAAGGGATCAATCCAAGTATATAAGGATGCAGTTAAAGGACCTTGCAGCCGAGGATTGCCTCTATGAAACGGGAAGTATTTCcacagctgctctgtgtgtaccaaacacacagcagttatgctGCTGATCAGTGTAAGGGAACAGATGTACAGAGCTGCAGTCAGCTGACTGGACAGATTTGTTCAATTAAAAGGGAGTGACTTTGTCTAACTGCAAGATATTTTTAGCTGACTTTGTACAACCttttaagtgttatttataaATCAGAAATATTGGTGAGTATAATTAGTGATATTATAGAAGGAACATGATACCAATccaaagtttggacacacctattatcaatcaattatttattattttattacttttgccTCATTTTAGAATACTAGAAAATTATACAGTGACCAAATAAGGGTTTTAAGTTTTTGTTTGTGGGTGCCATGTCCAGTATTTCGAAATTTAATTCGAAAAAATGTACATGGCCAGTAACAGAGTGTAACTATTTATACATACACTTCAACCAAATGTCTACAGAATCTTAAACATGAATTCAGTTTTGTctaaacttttgactggtactgAATGTGGCAAATGAAGTACTATATTTTACTGTCTTTTACAATAAGTGCAAATATTCATTTGTACCACTCAAAAGTGAGACGTCTCAGTTCTTCttttattgtgaatatttaACTCGCGTATAAAAGTAAAGATTATTGGAATGTTAATTATttcaatgtattttatattgtgaACCATTGAGataagaaagttttttttttaggctaagACAGGTGTTGTCTAAAAATCACTCGGGTTTGCAGTCAGACGAGCTTCTGTCTCAGTGTGAAAGCTGTGATCTGCCACATACTGTGTCGAAAAGTATGTCTTGGGTACCTATTTAAATAAAGTACTAACGTAGTCTCACCCAGTGCAAGGTTTCATACAAAGCTTCTGAGAAGCTTTAAATGTTCAAATTTACGTGTGTGTGGAACTTCTAATTCAAGTCTGgtatttttattccttaaatgtATTGATCATACAAGTTGCTTTCATTGAACACAGTACTGAACTCAAAAatcattttgaataaattacttttttgtCACGGGCAGAATTGGCAAATGCTATCAGAATGATCACGTATGTTCTCTTGGTCCCATGTAATTTATGTTGATAATGATATTTCTCTGTCATGGCTaccatgtgttatttatttgagCTGATTTATTGGAAATtcacaaagtgaaaaaagaaatacagtaaTGTGCttgaaacagattaaaaacttgAAAATCGTA

Function

GO:

id name namespace
GO:0051085 chaperone cofactor-dependent protein refolding biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K22999 TOR2A; torsin-2A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU417139 lncRNA downstream 5428 8628413 ~ 8629092 (-) True G352036
TU417138 lncRNA downstream 6199 8627430 ~ 8628321 (-) True G352035
TU416987 lncRNA downstream 80302 8553721 ~ 8554218 (-) False hint2
TU417101 lncRNA downstream 82398 8551921 ~ 8552122 (-) True G352011
TU417100 lncRNA downstream 82736 8551580 ~ 8551784 (-) True G352010
TU417115 lncRNA upstream 197 8640942 ~ 8641481 (-) False sh2d3cb
TU417175 lncRNA upstream 90338 8731083 ~ 8733868 (-) True G352068
XR_003403714.2 lncRNA upstream 330887 8971632 ~ 8976888 (-) True LOC113536901
TU417671 lncRNA upstream 541403 9182148 ~ 9184754 (-) True G352491
TU417681 lncRNA upstream 556038 9196783 ~ 9200688 (-) True G352498
XM_026931473.2 mRNA downstream 21900 8604203 ~ 8612620 (-) False LOC113537140
XM_026931476.2 mRNA downstream 22563 8603201 ~ 8611957 (-) True LOC113537140
XM_026931478.2 mRNA downstream 22563 8604203 ~ 8611957 (-) False LOC113537140
XM_026931475.2 mRNA downstream 22855 8604203 ~ 8611665 (-) False LOC113537140
XM_026931504.2 mRNA downstream 48509 8570517 ~ 8586011 (-) True malt1
XM_026931394.2 mRNA upstream 716 8641461 ~ 8654612 (-) True sh2d3cb
XM_026931393.2 mRNA upstream 716 8641461 ~ 8651738 (-) False sh2d3cb
XM_026931396.2 mRNA upstream 716 8641461 ~ 8651605 (-) False sh2d3cb
XM_026931425.2 mRNA upstream 41387 8682132 ~ 8747709 (-) False col27a1b
XM_026931424.2 mRNA upstream 41387 8682132 ~ 8747709 (-) True col27a1b
TU417110 other downstream 48594 8580900 ~ 8585926 (-) False malt1
XR_003403722.2 other downstream 1027054 7603259 ~ 7607466 (-) False card9
TU415778 other downstream 1859371 6764914 ~ 6775149 (-) True G350867
TU415368 other downstream 2282148 6346895 ~ 6352372 (-) False LOC113542569
XR_004577155.1 other downstream 2513561 6057235 ~ 6120959 (-) False pappab
XR_004577119.1 other upstream 400061 9040806 ~ 9049408 (-) False LOC113536894
XR_003403715.2 other upstream 1732684 10373429 ~ 10411686 (-) False iqgap2
TU418361 other upstream 1868338 10509083 ~ 10517205 (-) False LOC113536921
XR_004577163.1 other upstream 2094345 10735090 ~ 10748838 (-) False LOC113536823
TU420171 other upstream 5081360 13722105 ~ 13724835 (-) True mrpl41

Expression Profile