RNA id: XM_026931141.2


Basic Information

Item Value
RNA id XM_026931141.2
length 3035
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC113536953
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 8902182 ~ 8907720 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggttatatttatattttggagTTTCTGTGGGTCAGACACGGTGTGTAGGAGCGTTACCCGACTGGAACACCTTGATTTATGCCTCAGAGATGTCTGCTGTATCCTTGACAATCCACTGCAGTCACAGATGTAGCGTAGCAACAGGTAGTTTATCATCAGTGGGGGTTTCATGATCTCGGGTATTTGCTGGATGGATGGTCACTTAGAGTGTGGCAGGCGTAAACTTTTGGAACATGAAAGCTTTTTTCCTGGTCTGGGGAATTTTTCAAAGTTTGGgctttgtgtgttctgagagCTGTGTGCAGGCACAGGACTATGTTTGCAACCAAATCCCAACAGGCTATCCTCCTGGCCTGTCCTCTCTGGTGTTTTTTGTGAGGAACATGGGTGAGATCAACACGACCGTTTTTAACTACACTAATCTGTCCTCAGTCACCAGCCTCACTATGACACAAAGTGGAATTACAGCTATAGTACCAGGGGCATTTGCCCAGTTCCAAAGTCTCATGATGCTCAATTTACGCAATAATGATCTCTCCCTAATTACCTCAGACTGGTTTATCCATAAAGAGGTACTAGAGAGCCTAATCTTGACAAATAATAGCATTACGGCTTTGAACGAAAATTCCTTTGCTGGCCTTGTGGGACTCTTAAACCTGAACCTGGCCCAGAACCAAATTCGCACTATTACATCAGATAGCTTTCGCTTCCTGATTAGGTTGAAACATCTGGACCTGTCCCACAATAAGCTAAGACATTTGAGTGTGGACACCCTCATTCCATTAAACAACACGAAAATCCTTTTGCACGGAAACCCCTGGGACTGCTCCTGCAGTGTATATGAGTTCTCTCTCTATCTAAGAGAGCTACAAAAGACCTCCTTGCTGCAGAATGAGATGGAGGTGCTCTGTGAGAGCCCGGCTCATCAGCGAGGAAGACCTGTGTGGAATGTGTCCAAGTGTGTGAACCCTGTAACAGATGTAGCCCTTACAACCAGAAACAGCCAAACCCTCACACCAGGAAGCACTAACCTGTCTACTATTATCAGCTTAGTAGTGGTACTTTGTGCCCTGGTACTTGTTATCtgtgttttgtcagttttgtaCCACAGAAAACAAGAGCAAAAACATCGAGTGACCATCCAACCTTTTCCAGAAGAACAAGAAAGTGCtagacacacacaagcacactgtAGAGCAACGTCAGAAATTTCTAACAAGGTGGAATCCATTTCCTGTGACCAGAAAAGGAAACAATCAAATAATAGACTTCTATTAAGGCTGGACCAGACAGTGTTGGATTCACAAATTTACCAGATTTACAGCACAGGAATATACCAAACAAGAGAGATGACTGGCCGAGCCAAATCAGCAGGGCCGGTACTCTCTAGAACTGATGCCTCTGGGAGACGTCCAGACCCTGAAGTGGCAGATCCAGGAGTGTGGATGGTGAAGGATCAAGAAGTACATGCTGGATGGACAGAACAAGAGCTTGAGAAGTTAGATGGTAAAAATCGAAGAACTGAATCGAAGGAAAAAGAAGGCAAGTATGAAggcaaagaagaaaagaaacaagtGGGAAAAAGTGAAATGGAGAAGAAATGTAGACATGTTGAGAAACGAGATGATGAGTTTGTCACTACTTTGAAACCAGGAGTCAAGTATGAGCAGAATTTAGAGGGTGGAGAAAAGGATGAACATGCTTTAGAGGGAAATGTAAAAGATCAGGGATTTCTGCATACTGACGACTCTGTGCCCAGTGAGGAAGAATATgattctgatgatgatgaatataATTCGAGCTCCAGTTTATCAAGATCCCAACCCCCTCAGGAGCATGGTGATGGCTTCCAGCCTCTGGGAGATGTTGAGAACATGCCTTACCTCACTATTGGAGCTGACCCAGAAAAGCAAAGCCCAGATCCAGAGCAGATTTGCACTAAGGCTTCCACAGGACAGCTGAATTTAAGACCCATCAGGCGCACATTGTCCTGGCCTCCTACTGCAGCTCAGTGGAAAAAGCAATGGGCTCAAACCCAGCAGGTCCTCAATGTTTCTCCTAAGCTCGTTTTTGTCACGCAATATGAGTATCATATAGGCATGTTTCCCTCTGGCATATCTTCAGCTATTCCAGAAAATATCCCACAAGCCAGTTGTTCAGGGTTTCCCAAACAGCAAGCACAAATAAAGGACCTTGAACACATTCATTCTTTGGATCCTTTTATGGAAACTGGTGAGTTCATCGATCGTTCTTGCATCCAAGCCTTGTCCAGTTTGACCAGAGATTACGTTGAGATAAATGAAGGACAGCCTGAAATGATCAAGTGTCATCCTCCAATAAATAGTGAGGCACATTCTGACTTGGTCACTATCAAACCACTATGTGAAGGGATCAGCTCTGAAGCTGCCAATGAGGTGAAGATGAGAAGCagcaagaagaaaaagacaaatcAATCTCCAAAGGATGAACAGACACAATCCATATCTGGGAGGCACCCGAGAAGAGCAGAGAGATACGGAAGGAAAgtgctgagagacagacagagggatcAGTCTCACTCCAGCTCAGGTGCACACCCTTCTGGAGGATCTCCTAGTGATGACAACTTGCTAGTGGATAATGAGTACACCTTCATAGATCTTCTACATGAAGTGGTGGAGAACCATGGTCGCTGGACACGAGACAGATGGAGGCAAAGTCATATGAACaagcaaaaaatgaaacaagtCGCTAAATTTTGAGGAACTACCATGACTATCCATAGAAACAACAATAGTTTagacatgaaaaataattatcttTTAATTAAGTAAATGGGCAAGAGCAAAGTATAATCTGCTCTTGTAAACTTTAAGGTCAGTGACTAAATGAacttacactcaccatccaccttattaggaacaccagttgaagactagaaaaagacCGGTGAATCTTCAACTGTCAACAGTAGTTTAACTGTtgctcagtgttttgtttttcacaaaattctgtgtaaactctagagactgttgtgtgtgaaattcccaggagat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU417175 lncRNA downstream 168314 8731083 ~ 8733868 (-) True G352068
TU417115 lncRNA downstream 260701 8640942 ~ 8641481 (-) False sh2d3cb
TU417139 lncRNA downstream 273090 8628413 ~ 8629092 (-) True G352036
TU417138 lncRNA downstream 273861 8627430 ~ 8628321 (-) True G352035
TU416987 lncRNA downstream 347964 8553721 ~ 8554218 (-) False hint2
XR_003403714.2 lncRNA upstream 63912 8971632 ~ 8976888 (-) True LOC113536901
TU417671 lncRNA upstream 274428 9182148 ~ 9184754 (-) True G352491
TU417681 lncRNA upstream 289063 9196783 ~ 9200688 (-) True G352498
TU417667 lncRNA upstream 298708 9206428 ~ 9210530 (-) True G352487
TU417696 lncRNA upstream 425046 9332766 ~ 9332971 (-) True G352512
XM_026930995.2 mRNA downstream 129073 8764216 ~ 8773109 (-) True LOC113536867
XM_026931425.2 mRNA downstream 154473 8682132 ~ 8747709 (-) False col27a1b
XM_026931424.2 mRNA downstream 154473 8682132 ~ 8747709 (-) True col27a1b
XM_026931393.2 mRNA downstream 250444 8641461 ~ 8651738 (-) False sh2d3cb
XM_034298979.1 mRNA upstream 76 8907796 ~ 8934237 (-) True camsap1b
XM_034298947.1 mRNA upstream 31531 8939251 ~ 8978655 (-) True notch1b
XM_026931453.2 mRNA upstream 95745 9003465 ~ 9005817 (-) True LOC113537127
XM_026931496.2 mRNA upstream 100011 9007731 ~ 9015789 (-) True LOC113537151
XM_026931494.2 mRNA upstream 112167 9019887 ~ 9030779 (-) False adamtsl2
TU417110 other downstream 316256 8580900 ~ 8585926 (-) False malt1
XR_003403722.2 other downstream 1294716 7603259 ~ 7607466 (-) False card9
TU415778 other downstream 2127033 6764914 ~ 6775149 (-) True G350867
TU415368 other downstream 2549810 6346895 ~ 6352372 (-) False LOC113542569
XR_004577155.1 other downstream 2781223 6057235 ~ 6120959 (-) False pappab
XR_004577119.1 other upstream 133086 9040806 ~ 9049408 (-) False LOC113536894
XR_003403715.2 other upstream 1465709 10373429 ~ 10411686 (-) False iqgap2
TU418361 other upstream 1601363 10509083 ~ 10517205 (-) False LOC113536921
XR_004577163.1 other upstream 1827370 10735090 ~ 10748838 (-) False LOC113536823
TU420171 other upstream 4814385 13722105 ~ 13724835 (-) True mrpl41

Expression Profile