RNA id: XM_026931152.2


Basic Information

Item Value
RNA id XM_026931152.2
length 5775
RNA type mRNA
GC content 0.46
exon number 38
gene id iqgap2
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 10370162 ~ 10411686 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATATGAGCAAACTGACAGTAAAGGAAACTGTTAGTGACAGCCACTGAGAGCAATGGGAAAGCTGTTTCACACCAGACCGCAGACATGACaggacactttttttaaacagagtctGGCTAAAAACACCGGGATATACTTTCTTTCAAAGTCATTATTCAGCAAGGTCTGAGAATAAAGAAAGTGTGAAAGGAAGCGCAGTTGATGTTGGGAGTGTAAAAAGGCGAGGGCACAGTGACAGGATGTACTATGAAGACGGCGCCACTTCACACAGACCCCGCTATGGATCCATTGTGGATGATGAGAGGCTCTCAGCAGAACAAATGGATGAAAGAAGACGGCAAAACATTGCCTATGAATATCTCTGTCACCTAGAGGAGGCCAAGCAGTGGATGGAGGCCTGTCTGGAGGAGGAACTTCCTTCCACCACAGAGCTTGAGGAGGGCTTGAGGAATGGCGTCTACCTCGGCAAACTCGCAAAATTCTTTGCTCCCAAATTGGTTTCTGACAAGAAGATCTACGACAGAGACCAGGCCCGTTACAAGCACACAGGGCTACActtcagacacacagacaacacagttCAGTGGCTCAGAGCTATGGAGTCCATTGGTTTGCCAAAGATATTCTATCCTGAGACGACTGACGTGTATGATCGTAAAAACATGCCCAAAGTGATCTATTGCATTCATGCACTCAGtttatATCTCTATAAATTGGGGATTGCACCACAAATCCAAGATCTGCTGGGCAAAGTGGACTTCACAGAGGAGGAGATCAGTAACATGAGGAAAGAGTTGGAGAAGTATGGTATCCAGATGCCAGCCTTCAGCAAGATCGGTGGCATCCTAGCAAATGAGCTCTCAGTGGATGAAGCTGCTTTACATGCTGCTGTTATTGCCATTAATGAGGCCATAGATAAAGGTCAGGCTGAAGGCACCATGTCAGCTTTGCACAACCCGAATGCGATGCTGAGGAACACCAACAAGGAACTAGCTCAGGGCTACCAAGATACACTGAGCCAGGggaagaggaggaaagagaAACTTGCCTCAGGACGTCGTTCTTCCATTGCGACTGAAGAAAGGGATGTATATGAGGAGTTACTGACCCAGCAGGAAATCCAAAACAGTGTGGACTTGGTCAACATGCTTACAGCTGTGCAGAAGGTGAATCAGGCCATTGATGTACAGGATAAAGAGGCTCTCCTGGCTGCCCTCAGGCTACCTGCCCTGGGCATTCTCAGTATCTTAGAAGCTAACTCTCAGTGGTACCTGGAACACTTTACTTCATACAGAGATCACAAAGCTAAGGATGTATTTGCTGCAGCTCAGCTGGAGAGAGATGAGATTCAGAGGGCCGTGAGCACCTGCAATGACTTTGCTGAAGCAGAGAGACGAAAGCAGGAGTCTGTTGCTGCCATCAACGCTGCCATTCGTCAGGGTATTGCAGAGAACACAGTAGAGGAGCTGATGAACTCAGAAGCCCAGCTGCCCCTGGTGTATCCCACTGCTGCCAACTTGTACCAGTCTGAACTCTTCAGCCTACAGAACAGCTCAAAGAATAAGGCGGGTCTGAGCCATGAGGAGCTGTGTGTTGCTGTCGAGATGCTGTCAGCGGTAGCTGTCTTAAACGAGTTGCTGGACACTAAGGATGTTGTGGCTGTCAGCGAGCAACTTTCTGACTCTCCACTTGGTTTCAGCAACATTGACCATGACAATATGCAGAGGTATGCAGACATGCTGATCAAACTTAGAGCAGAATCTCTCGCTCAGGGCCAGGAGTTTCTCACCTGGAACGATGTTCAGAAGTGCATTGACACTGTCAACTTTCAGGTTCATGAGGAAAATGAAAGAGTCATTGCCATTGCTGAAATCAATGAGGCTCTGAATTCTGGAGATGCAGAGAAGACATTTGCTGCTCTAACTCTCCCAACAGCCAAACTACAGGGAGTTAATCCAGCTACAGCCAAACACTACTATGATCTGCTGCTGCACACCAAAGACCTTATCTGCAAGAGATCAGGAGATGAATCTGCAGTCCTGTGGCTGGATCAGATTCAGGAGGCGATACACACTGCCAATCAAGACCAGGAGGATGCTCTGAAATTGGCCGAGGCAGTGGCAGACATTAACCGAGCAATAGCTGCAGGACATGAGGAGGACACTCTGAGTGCTCTGCAAAGACCATGTGTAGGACTGAGGGGAGTGCTGGCTGAATGTGCACACCTTTACCAGACAGAATTAGAACAGCTGCAgtctcagcacacacagcaaGGGAATAGTGGTAGCTTTTGGGTGAAGCACAGAATCAAGGACAAATATGACTATTTCTACAACCTGGAAAGCCAGAAAGGGACATGGGTGGAACCAGATGACTTTGTCCATGATAGCACACAGCTCACAAAAGAGGATATTCAGATGGTTGTAAGCAGGGTGACAGCAGAATATAACCGAGAACAGCTCTGGTTGGCCAATGAGCCGCTCATCATTCAGCTTCAGGCTTGGACTCGTGGATATCTGGTGAGACGGGCTTACAATGACAGACTGAAGTATTTGAAGCAACAGGAACCAAGTGTAGTCAAACTACAGGCGTCCTGGAAGGGATATAAACAGAGGAAAGCTTACAAGGACATGCTACAGACATTCCAAAGCAATGTGCAGACTGTGGTCAAGTTGCAATCTTTGGTGAAAATGTGGCGGGCCAGACAAGCATACAGAAAGAGACTACAGTATTTCAAAGACCACGAAAAAGAGATAGTCAAGATTCAGGCTTTTCTAAAGGCAAACAAAGCCAGAGATGATTACAAAACTCTCACTGGTGCTCAGGATCCCCCTCTCTCTGTGGTCCGTAAGTTTGCTCATCTCCTGGAGCAGAGTAACCTCGACCTGCAggaggaacaggaagtgataCATCTCCGTGAAGAAGTGGTAACTAAGATTCGTGCCAATCAGCAAATGGAGAAGGACTTGAACTTGATGGACATTAAGATTGGCCTGCTGGTGAAAAATAGAATCACACTTCAGGATGTGGTGTCACTCAGTAAGAAGATGAAGaccaaaaagaacaaaatgaccAAAGAAGATCTGGCCACAGGAGATAAACAGGGCATCAAAGGCCTGAGcaaagagaagaggaggagactGGAGGCTTACCAGCATTTGTTTTATCTGCTACAAACACACCCATCATACTTGGCCAAGCTCATCTTCCAGATGCCTCAGAACAGGTCCACTAAATTCATGGACACAGTGATTTTCACCCTGTATAACTATGCCTCAAACCAGCGTGAAGAGTACCTGCTGCTCAAGCTCTTTGAGTCTGCTCTCAAAGAGGAGATCAAGTCAAAAGTAGACCAAATCCAGGACATAGTCACTGGGAACCCAACAGTCATTAAGATGGTAGTGAGCTTTAACCGAGGTGCTCGGGGTCAGAATGCCCTCCGGCAGCTTCTCTCCCCTGTGGTGAAAGACATCATTGAGAACAAGACCCTGGGCATAAACACTAACCCCATAGACATCTACAAGGCCTGGGTCAACCAGATAGAGACTGCTACAGGAGAGGCGAGTAAACTGCCCTATGAGGTGACAGTGGAACAGGCTCTGTCACATGAGGAAGTGAGGGACAGGCTGGAGGCGTCTAATCAAACACTGCGCACTGTTACAGACAAAGTGCTCAGCTCCATTATGTCTTCGGTGGATGCCATCCCCTATGGCATGAGATACATAGCTAAGGTTTTGAAGGATACACTTCATGAGAAATTCCCTGATTCATCTGATGATGAGCTACTGAAGATTGTTGGAAACCTTCTCTATTACCGGTATATGAACCCAGCTATAGTGGCTCCAGATGGATTTGACATCATAGACATGACAGCAGGAGGGCAGCTGCATTCAGAGCAGCGAAGGAACCTGGGCTCTGTGGCCAAGATGCTGCAGCACGCTGCTGCTAACAAACTGTTTGAGGGCGAGAGCGACCACCTCACACCCATGAACAGTTATATCTCGTCCACCTACCAGAAATTCAGAGTATTCTTCCAGGCTGCATGTGACGTCCCAGCTCCAGAAGAGAAGTTTAACGTGGATGAGTACTCTGACATGGTGACACTTAGCAAACCTGTCATCTACATCTCCATAGAAGAGATCATCAACACTCATTCACTTGTGCTGGAGCACAAGGAGGCCATTGCTCCAGAACCAAGTGATCTTCTGCATGAACTCCTGGATGACTTGGGAGATGTTCCTGACATGGAGTCACTGATTGGTGAAGGTGCTGTGGATCCAAATGATcccaacaaagaaaacacactgaGTCAGTTGGCTAAAACTGAGATCTCTCTTACACTCACAAACAAATTTGAGCTGGTGGATGGTGATGACAAAGACATGAAGGGACTGATGATGAAAACAAAGAAGCTGATAGTGGATGTGGTGAGAATCCAGCCTGGAGAAACACTGACAGATATCCTAGAGACTCCAGCTACTTCTCAACAGGAATCGGAGCATGTTAAGATGGTGGAGCGGCGGGCGGCGCAAGACGCTACTGCTCCAGAGGGGCTGAAGAGCAGCCAGGCTGTACTGGAGGACACACAGCTGCCCCTAGAACAGAAAAAACGTAAGATCCTCAGGAATCTGCGCACACTGGAACAGGCTGGCTTGGTCAGCTCCGCTAACAAGTACCAGGAGCTCATCAATGACATCTCCAAGGACATTCGCTACCAGAGGCGCTACAGGCAGAGGAGGAAAGGGGAACTGGTGAAGCTCCAGCAGACTCTGAGTGCCCTTAACTCCAAGGCAGCTTTCTACCAGGATCAGATCAACTACTATGACACCTACATCAAAACCTGCCTTGATAACCTCAACAGAAAGAACTCTCGCCGATCCATCAAAATGGACCGAAAAGGCGAACAGAGAGGAAGTAAGAAGTCGAAGCAGCAGTCTTTGAAGTACACAGGTGCCAGGTTGCATGAGAAAGGCGTCATACTGGAGGTTGAAGGACTCCAGACTAACCAGttgaaaaatgtaatgttcGACATCTCACCCTGTGAGGAAGTTGGGGATTTTGAGATAAAGGCGAAGTTTATGGGAGTCGAGATGGAAAAAGTCCAACTGCATTTCCAGGATCTGCTGCAGCTGCAGTATGAGGGAGTTGCAGTCATGAAAATGTTTGACAAGGCCAAAATCAATGTTAACCTCTTAATTTTTCTACTAAACAAAAAGTTTTATGGAAAGTGACTTTAACATATGAAGATTCAGTGAATGGTCTTATGTGATGCTTAGTAAGAGTGGAGTGCCTTCAATTTAAGTTGGTTTTGTAAAATTCAGGAGGAACTAGAGCAGGAAATTCTGGGATTAGGTATTTAATTATGCGATATCTAAACATATCAAGAGTTTAAATATCAAGGCTGTACATGAACAATTAGCACACACGCTAAAATACTGTGGTATTGTTCAgggctgagtttcccaaaagcatagCAGCATAAAGATCATCGCAAAATGATTGAGAAGGTATCACACTGTACACTTTCCCTCCCAGTTAAGGTGATCTAAACTGACTGATACTTTTGGGAGCCCAGAACTGGGATCAGACTGAAACCATGAAGACCAGCATGTCATTCCAGTGAATTGCTTGGCTgacatcttttatttttatgcaccCCTTTTCCCAATAATTGTAcatgaattatattttaaatggtATTAAATTtgaagtatatattttatatttaggtAGTACTGTATGTGAAACACTGttttatattactgtaaaaaaaaa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0051056 regulation of small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K05767 IQGAP2_3; Ras GTPase-activating-like protein IQGAP2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU418099 lncRNA downstream 56806 10312587 ~ 10313356 (-) True G352883
TU418097 lncRNA downstream 60530 10309285 ~ 10309632 (-) True G352881
TU418094 lncRNA downstream 132885 10236884 ~ 10237277 (-) True G352878
TU418085 lncRNA downstream 144823 10178689 ~ 10225339 (-) False G352869
TU418342 lncRNA upstream 20342 10432027 ~ 10588716 (-) True G353075
TU418337 lncRNA upstream 171140 10582825 ~ 10586818 (-) True G353070
TU418444 lncRNA upstream 338181 10749866 ~ 10750755 (-) True G353156
TU418465 lncRNA upstream 381567 10793252 ~ 10794433 (-) True G353171
TU418616 lncRNA upstream 539767 10951452 ~ 10952329 (-) True G353316
XM_026931283.2 mRNA downstream 504 10367395 ~ 10369658 (-) True f2r
XM_026931427.2 mRNA downstream 30968 10333426 ~ 10339194 (-) True zgc:110626
XM_034299015.1 mRNA downstream 101113 10237636 ~ 10269049 (-) True vcana
XM_026931268.2 mRNA downstream 101113 10237636 ~ 10269049 (-) False vcana
XM_026931041.2 mRNA downstream 555751 9810181 ~ 9814411 (-) False LOC113536891
XM_026931611.2 mRNA upstream 6841 10418526 ~ 10449587 (-) True sv2ca
XM_026931612.2 mRNA upstream 6841 10418526 ~ 10449586 (-) False sv2ca
XM_026931069.2 mRNA upstream 50927 10462612 ~ 10470825 (-) True ankdd1b
XM_026931048.2 mRNA upstream 59852 10471537 ~ 10479592 (-) False polk
XM_026931047.2 mRNA upstream 59852 10471537 ~ 10479592 (-) True polk
XR_004577119.1 other downstream 1320754 9040806 ~ 9049408 (-) False LOC113536894
TU417110 other downstream 1784236 8580900 ~ 8585926 (-) False malt1
XR_003403722.2 other downstream 2762696 7603259 ~ 7607466 (-) False card9
TU415778 other downstream 3595013 6764914 ~ 6775149 (-) True G350867
TU415368 other downstream 4017790 6346895 ~ 6352372 (-) False LOC113542569
TU418361 other upstream 97398 10509083 ~ 10517205 (-) False LOC113536921
XR_004577163.1 other upstream 323405 10735090 ~ 10748838 (-) False LOC113536823
TU420171 other upstream 3310420 13722105 ~ 13724835 (-) True mrpl41
TU420169 other upstream 3310484 13722169 ~ 13724835 (-) False mrpl41
TU420170 other upstream 3310976 13722661 ~ 13724835 (-) False mrpl41

Expression Profile