RNA id: XM_034298909.1


Basic Information

Item Value
RNA id XM_034298909.1
length 4549
RNA type mRNA
GC content 0.50
exon number 25
gene id rasa1a
representative False

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 9739011 ~ 9767469 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGATCGTATCGATGCACGCGGCGCTCTGTTGAGCTGGTCTGCGCGCGGGGCGCACGGGCACGCGCAGGGAAAGGAGTGGGACTGGGAGCAGCTGTGGCAAATGTTCCAACACTGCACTCATCTcgaaagaaaggagaaagttTGGCAGAAGGAACGGCCATAACGCGTTCCCCGAGTggaaatgaagaaagagaggagtGTCGGATACTAGAAGGCAACTGCGGACCGTGTCAGAGAACAGCTCGGGGCCTTTTCTGGAACTCTTTGGAAACAAAATAACAGCCCAGAAAAAAGCCTggcgcacacactcacaataaAACCACACATTCCCGTCAAGTGGACTGCTAGCAAGAACTGGCGCTGCGGCAACACACCGACTGATTACTCAACTTATTCTGGCGTTTTTACTTTACGTTATTTCATATTCGTCTCATTTTCCCCGTCTAAACTCGAAACTCAGGAAACAATGAAGACATAACTCATCCAGTGTACCGTCAGCTAGctttggctagctagctagctatcgtGTGTGGACTAGCCagcgctagctagctaacggGAGGCGTGCGGTGTTTACCGAGAAAGTTTTGGGCGACGCTTTAGAGATTAGAGGAGCGTTTTGAATAAAGGAAGAAGGAGCAGGCTCTCCTCTTGTGTCGCATTTTAATGGACGCCGAGGTGCAGAACGAAGGCAGGAGCACAGTGGCATCGGACGGTCGAGGCCCCGAATCGACCCAGTTTCCGTTTTATGCCAAACCGACTCGAGTGCGGGTGAGTGAGCTGTGCCAAGCCGCTGCGCAGAGCTACCGGCCACCGTCCGCCCCGTCCCCTGACGGCCTGAGCAGCGCGATGATCTACCCTGTTGCCGGAGAAGAGCTCACTCGAGCCGGGTCAAGCTCAGGACCAGGCGGAGGCTGCTGTTCCCCGGGCTCAGAGGGACCCGAGAGCCGCACGTCTCCCAGCTCGGCGGCTCCGGACGGGCCTTCAGGCTTCCCGCCgctgccgccgccgccgccgttTTTTCCCGGTTCCGGAGTTCACGGCAGCGTGGACGAGAGCGACCAACAGGACGGAGCGGAGTACGAGGAAGAGGAGGCTGTGTTTTCCCTCTCCGCACCACCCACTAACCAATGGTACCATGGGAAGCTGGACCGGACCATTGCAGAGGAGCGGCTGCGCAAGGCCAGGACACCGGGCAGCTACCTGATCAGGGAGAGCGACCGGAGGCCCGGCTCCTTCGTGCTCTCCTTCCTCAGCAAGACCAGTGTGGTCAACCACTTCAGGATCATTGCCATGTGTGGGGATTATTACATTGGTGGGAGACGGTTCTCATCCCTCTCAGACCTCATTGGTTATTACAGCTATGTGTCTTGCCTACTGAAAGGTGAAAAGCTGCTATCACCAGTGGCTCCACCAGAGCCTGTGGAGGACAGGAGAAGAGTGAGAGCCATCCTTCCATACACCAAAGTGCCAGATACAGATGAGATCAGtTTCCTCAAAGGAGACATGTTTATTGTTCACAATGAACATGAAGATGGCTGGATGTGGGTGACCAATGTCAGAACGGAGGAACAGGGCCTTATAGTGGATGATctggtggaggaggtgGGACGAGAAGAGGATCCCCATGAGGGCAAAATCTGGTACCATGGGAAAATCAGCAAACAAGAGGCATACAATCTGTTGATGACAGGCCAGGTGTGCAGCTTTCTGGTGCGGCCGTCGGACAGCACACCGGGAGACTACTCACTTTTCTTCCGCACTAATGAGAACATCCAAAGGTTCAAGATCTGCCCCACCCCCAATAACCAGTACATGATGGGTGGCAGGTATTACAACAGTGTTGATGATATCATCGAACATTACAGAAAAGAACAGATTGTAGAAGGCTATAACCTGAAAGATCCAGTCTCAAATCAGcaacaagAACAAGTACTCTGTAATGCCGTCGACGAGAATCGAGAAATTTACAAAACTATTCGGCGAAAAACGAAAGATGCGTTCTACAAAAACATTGTCAAGAAAGGATACCTCCTGATTAACAAAGGCAAAGGAAAACGCTGGAAGAATCTGTACTTCATCCTGGAGGGCAACGATGCTCAACTTATCTACTTTGAGAGCGAGAAGCGAGCCACCAAACCCAAAGGGCTGATCGACCTCAGTGTGTCCTCAGTGTACTGTGTGCACGACAGTCTGTTTGGCAGGCCAAACTGTTTCCAGATTGTGATTCAGCACTTTAGTGAAGAGCAGTGCATTTTCTACTTTGCGGGAGACACACCTGAGCAGGCCCAGGACTGGATGAAATGCCTACAAACCTTCTGCAGTAACTTAAGGAAGCCTGCACAGGCCACTTCCAACAAGCGTCTACGTCAGGTGAGCAGCTTAGTGCTTTATGTGGAAGAGGCCCACAAACTTCCCATCAAACATTTCACGAACCCATACTGCAACATCTACTTGAACAGCGTCCATGTAGCCAGGACTCACCCGAGAGATGGCCAGAACCCAGTCTTCACAGAAGAGTTCATCTTTGAtGACTTATCCAGTGAAATCAACCGATTTGAAATCAGCCTAAGCAACAAAACTAAGAAGAGCAAAGAAAGTGATATTTTGTTCATGCGTTGCCTTCTGAGCCGGTTGCAGAGGGGCCAGATGATAGACGAGTGGTTCCCATTGAGCTCTCACGTGCCTCTGAAGGGAATTGAGCCGGGCTCCTTGCGTGTGCGAGCACGCTATTCCATGGAGAAAATCATGCCAGAGGAGGAGTACAACGAATTCAAAGAAGTCATTCTACAAAGAGATTTCCATGTGATCTATGCACTGGCTCATGTATGTGGGCAGGACCGCACTCTACTGGCCAGCATCCTGCTCAGGATCTTCAGACACGAGAAAGCTGAGGCTCCACTACTCAGGACTCTCAATGACAGAGAGATTAACATGGAAGATGAAGCCACCACTCTGTTCCGTGCCACCACCCTGGCCAGCACACTGATGGAGCAGTACATGAAGGCTACAGCCACGCCCTTCGTCCATCACGCCCTCAAAGACACCATTCTTAAGATTATGGAGAGCAAGCAGTCCTGCGAGCTAAACCCATCTAAACTGGAGAAGAATGAGGATGTAAATCTGAACCTGACCAACCTGCTCACCATCCTGTCTGAGCTGGTTGAGAAGATCTTCATGGCTGCTGAGATCTTGCCTCCAACTTTGAGGTTTATATACGGGTGCCTGCAGAAGTCCGTGCAGCAGAAATGGCCCACTAACACTACAATGCGGACCAGAGTTGTGAGtgGTTTTGTCTTCCTGCGATTGATCTGCCCTGCCATTCTCAACCCCAGGATGTTCAACATCATCTCTGATCCTCCTTCTCCGACGGCAGCCAGAACACTCACACTTGTGGCCAAGTCAGTACAGAACCTGGCCAATCTGGTGGAGTTTGGGGCCAAGGAGCCCTACATGGAAGGAGTGAATCCATTCATAAAGAATAACAAACAACGCATGATCATGTTTCTGGATGAGTTGGGGAATGTCCCTGACTTGCCTGATGCTCCAGAGCACTTTAGGACTGATCTGTCCCGAGACCTTGCTGCCCTGCATGAGATCTGTGCTGCTCACTCAGATGAACTCCGCACCTTGAGCAACGAGAGAGGAGCACAGCAGCACGTGCTGAAAAAGCTGCTGGCCATCACAGAGCTCCTCCAGCAGAAACAGGTGCACTACGCCATGTCCAACAGCAACAGGTAGTTCCATTTCccgctctctgtctgtcactccaTCTGTCTCCGTCTTCATGGAGTAGCCAGTGGGATCCCAGCATGCTCCACCttcatcaccatggcaacctCTATCCCTGACTATTTAGCCACTTCCCCTTCCCTTCCTTTTCCACCATGCCAAGATAACTATGCAACTACAGCAGTGAAACAAAAAGCCTGGGGCCTGAGTCCCACACTGACAACTTTTAAGCTATTCCCACAGCAACTTCAAGTTTGACTGTGCCCCATAATATGggtacttttttgtttttgctttttcttcaaCCTAAATGGGTCCCAGTAGTGACCCATAAAGCTCATTGTACCATTGAACAGCCATTGCCAAAGCGTTTGTTTGTCTGCTTGATAAGAAAACTCAACTGACACAAGGCTGCAGCGATATCTATAACTGGATTATGAGCTATAATGctttttatactgtaatttgTTACTGATTTACAAGgtcatgaatatgcaaaattGTGCTCAAActagtgttctttttttccatttacttaTGATTGTGGTGTAGACAGGATTTTTAAAGAGAGtatgattattttatatcagAACAATAAATTCTCTTGCTGGAATCATGAGTATATAATTTGAGTTATCTCCCCTGCTtctatttgttatattttttgaTTTGGTCCACTCTTCCCTGAGATTAATCCTAAGCCAGACTTGTCCTCAGGGGAAGGAGAAATGAGATGTTTACAGCAGTAAAATTTACATTAGTACAGACTGTATAAGGAATGCATGCACttattaaaactttataaaGTACTGACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU417800 lncRNA downstream 57213 9681029 ~ 9681798 (-) True G352610
XR_004577161.1 lncRNA downstream 132037 9603400 ~ 9606974 (-) True LOC117595977
TU417696 lncRNA downstream 406040 9332766 ~ 9332971 (-) True G352512
TU417667 lncRNA downstream 528481 9206428 ~ 9210530 (-) True G352487
TU417681 lncRNA downstream 538323 9196783 ~ 9200688 (-) True G352498
TU417869 lncRNA upstream 8497 9775966 ~ 9814416 (-) True LOC113536891
TU418084 lncRNA upstream 381788 10149257 ~ 10225339 (-) False G352869
TU418083 lncRNA upstream 402029 10169498 ~ 10225339 (-) False G352869
TU418085 lncRNA upstream 411220 10178689 ~ 10225339 (-) False G352869
TU418081 lncRNA upstream 450355 10217824 ~ 10225339 (-) True G352869
XM_026931085.2 mRNA downstream 10562 9726395 ~ 9728449 (-) True LOC113536918
XM_026931311.2 mRNA downstream 366392 9369976 ~ 9372619 (-) True polr3g
XM_034299190.1 mRNA downstream 378130 9229961 ~ 9360881 (-) True adgrv1
XM_026931552.2 mRNA downstream 562549 9169861 ~ 9176462 (-) True pmpca
XM_026931553.2 mRNA downstream 564678 9169861 ~ 9174333 (-) False pmpca
XM_026931041.2 mRNA upstream 42712 9810181 ~ 9814411 (-) False LOC113536891
XM_034299015.1 mRNA upstream 470167 10237636 ~ 10269049 (-) True vcana
XM_026931268.2 mRNA upstream 470167 10237636 ~ 10269049 (-) False vcana
XM_026931427.2 mRNA upstream 565957 10333426 ~ 10339194 (-) True zgc:110626
XM_026931283.2 mRNA upstream 599926 10367395 ~ 10369658 (-) True f2r
XR_004577119.1 other downstream 689603 9040806 ~ 9049408 (-) False LOC113536894
TU417110 other downstream 1153085 8580900 ~ 8585926 (-) False malt1
XR_003403722.2 other downstream 2131545 7603259 ~ 7607466 (-) False card9
TU415778 other downstream 2963862 6764914 ~ 6775149 (-) True G350867
TU415368 other downstream 3386639 6346895 ~ 6352372 (-) False LOC113542569
XR_003403715.2 other upstream 605960 10373429 ~ 10411686 (-) False iqgap2
TU418361 other upstream 741614 10509083 ~ 10517205 (-) False LOC113536921
XR_004577163.1 other upstream 967621 10735090 ~ 10748838 (-) False LOC113536823
TU420171 other upstream 3954636 13722105 ~ 13724835 (-) True mrpl41
TU420169 other upstream 3954700 13722169 ~ 13724835 (-) False mrpl41

Expression Profile