RNA id: XM_026931276.2


Basic Information

Item Value
RNA id XM_026931276.2
length 4655
RNA type mRNA
GC content 0.50
exon number 20
gene id kiaa0825
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 7106152 ~ 7226684 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTACTTCCTGCTGGTTGTCAGAGACGCTTTTAAGGAGTGTTGTGACACTGTTTATAAATAAGAGGCGCTGAAGAGAGAGTGTTTGTCTCAGGAGTTGTTGTGTTTTGACTTTATTTTCGTATATTAgagattttgttttgtgttaccGGTACAAACTGAAGTCGGTTTTGTGCGATTTGCTTGTTGTGTATGCTAATTTAGCATGGAAAGCCGTCTAATGTCTTTCAGAGCCACTAAACTTGCTCAGCTTTTCCCACAACCTTAGACATTTAATGTACCGTTACATGGAAGAGTCCACGACTTTTTCcactttcatttaatttgtccAGATTATTTAGATATTCCAGTATGACCAGTATGGCACAAGCATCCTGACCCAGTAGCATGGACATATTCATCACCTACactgtgaaatgaaaataaacccTGAGGATAAGGATTATAAACCGCCTCCTGGATTTACTATCCTATAAGGCAGAGGAATGGAGCGGCAGGGTGACTCTCCACATGACCATGCTTTCGTGGAGCTGCCGGTGCCGAGCATGCTGAGTGTACTGGGTGAGGCGGACCTCCAGGTCCTGATCCGTGAAACAGAGGAGAAGCTGAAACTCAACGCCTGCAGtattgAGCAGAATCTAAGTGAACTGCAGACTAAGATTGGAGAGGCCTGGGCTGGTGAGAAGGTCCACAGTCCTACAGAATGCCTAAAGTGGTTCAGTCAGAGTAATCTGGGTTTGCTGAAACCTGTCTCTACTGGTCACCAGGAGCTTCTGGACTTCCTCAAAGCACTGCAACACTTCCTGAAGACGGAGGAGGCTTACACAGAGGCAGTTCTCCAGCTGCTGTTGAACATCTCCTCTCAATGTGGGGTGGCCTTCCCCACCTCTGACTCTTTATCTGAACAGAGCCAGACTTCCATGGCTCCATTTTGCTCTGTAAATGATGACATCGCTCTGGAGGTCCAAGAAACCTGGGATGATATCCGGCTCTTGCTGCGGCGCCACCTGCTGGACAAGTTATCCATGGATGGTTCTGGAGTCCCTCAAAGGGCAGTGTTTCTTGTGCAGCAGCTCTGCTTCCTGTACACCGAAACAGAGGTTCTGGAGAAGTACCAGGCACTCCGGAGCAAAATGGTTCTGGGGCTTCTCAGGAAAAACCAGCCATGCTGTCCAGATGGAGAAACCAGCTTTCAAAGGTTggctgtggtcttccaggctgTCTGTCCTGCCTTCTGTGCCATGCTGGGTGAGGACATTCACGTCCTGAATGGCATAGTTGAGCCACATTGCATTCTGAGCTTTATGAACCAGGCCTACCTGTGGACGCTGGCACAGGAGCTGGGCTTGCTTATGGAGAAGGAGATGGAGGTGGTGTTGAAGGACAACAGTACACAAGGAGGGAAGGGGATGAGGAGCTCAAGCAAGAAGGCAGCAGTAGCTCCTCAAGACTCTCCCCAAACGAGCAGGAATTTCTCCCTGACCTCAGAGCAGCTGAGAGGCCTGGTCCAGCTGGCCACCACAATGCTGCAGCTGGAGCGCCAAGTGGAGGATCTAGCAACCGAGCTGGGTTTCCTCAACTGTGCTGGAGAGTCATGTGGTGTTAAAGGGAACCTAAAGAAAGTCAGGGATGATGTGGAGATGTCTGCACTGGATGGTAAAGTCACACCAGACCTGCTGCTGCAGAGTACAGAGgtggtgtgtCTGGAGTTTGAGTGGAGGGCTGCATTTCGGGTACTGGTTCCTCAGATGGCTCACGGTGTGAAGATGTTTCTGGAAGATGTCTGCAGTAAGAGTCTACAGCAGGAGGAGAGGACACATAGCTCCACCTCATCTCTTATCCCTCTAGCCGGTGTTTCTCTCAAACAGGAAGCTGAACTCTGTCCAGAGAGAGACAAGCCCAAGATGATCGCTAAGTTCTGTGCAGATGTGATGGAGGAGTTGGATGCTCTCCTCCCTTTGGCTGTGGCGTGTAAAGAAGATGCTCTGCTCCCTGTGTGCTCCTGCTACATAGAGTTGTGTGGCCAGCTAACCTCGGCTCTCCTGACCAAGCTGGATGAGAGGGCAAGGGAGGTTCCTCACTCCTCACCCCTCAAGAACCTTCCCACCATACTGGCCTCCAGCACTTACATCCACCACAGACTGGCTTACTATGAGAGCCAGCTAGGGGACACCAATCGCATGCCTCTGACTCTGCTGCCCATCCAGAGGAGTCAGGAAGTGACGGAGGCCATTCACGAGCATCTGACCAGCTACTGCGTCCATGTGTGTGCCACCAGCATACTGCAGGATGCCGAGAGTCACTACTGGGCAGATGACAAGTCATTTTATGAGGGTGAAAGGTGTTCCTTCTCTATCCAGATGTGGCACTATTTCCTCTCAGCTTTGCGCAGTGACCTGTGGAGCACCGTTTCCCCGCTGTTGGCCCAGCAGACCCTGGTGCAGGTGTTGGCACAGACTCTAGAGCTCCTGCTTCAGCGATACTCCAGAGCTCAGCCCTCCTTCAAAAGACACCCTCAGATCAGGATGGATATCACAGCCATCCTGCTGTGTGTGGAGCAGCTGATGTGGTCTGTGTATGACAGCATGGAGGAACTTGTCAGACCAGAGATGCCTTCAGAAACCTCCAGAACCTGGGTGTCCATCATCCACAGCCTGTGTAATCAGCTCCTGAATGTGCTTGTCATCCACACTGCTCCTCTAACAGAGCTCTACAGAACTTTCCAGAATGGTTTTAGTGAAGAATCTTCCATCACTCCAGCAGATGCACACACTAGCCATACTCCCTTTTGGCTAAATATCATAAACCCTACACTCTTCCCACTGGATCTGCTAAGGGGTGGGGTGGAAAGTGAGAGCTCGGCTCTGTGGCTGCTGAACATAGTGAGCTCAGGACCTGGCTTCTCTCCGGCTCTGCTCCTGCAGGCTATACTGCACCATGACTGCCTCCTGCTGCGCCTGCTGATCTCCCATTCCTATCTGTGTTTGGACAGTAAGGTTGAAGTGTCCCCTGAGGCTCAGGAAGCTGCTGCTGAGTTTGTGGAAGCTATTTTTGCCATCCTGTCCTCCCTAAACAATGTCCCCAGGGCTCTAGCACTAGTGCTTGAGGGCTACCTGGACAGAAGACACCTATGGGACCACTTTTGCAGTTTAGCAGATCCAGTCAAAGTAGAGCCTGTGCTGTTTAAGTGTGTCAGAGACGTCATCTGCAAACCCATCAGCAGCCTGTTAGGGCACTTAGTGAGCATGATGCAGACATGTGAGGAACGTCCTAGCCCACTGCTCAGACAAAAGCTCCCTGAAAGTGTACAGGCCAAGATCCCTAAAGAGTGGAACTACACACCTCAGGAGGCCAAGACGAAAGACAGCAACAAGATTGCCATTAGTCTGACCATTCAGGctctctccttcatcttcacGCACCTCCCGTCCTGTGTGGCCTCCATCCCCCTGCCTGTTCGCTTCCTCTTTCACATGGCTGAGAAGCACCAGTGCCAGAGCACCAGACAGCTGAGGCCCACGGGTCTGCTTATCCGGGCGCTCCTCGGCTCCCTGTGCCAGGACCTGGAGAATGGCGAGACCCTGGAGCTGGTATCCACTGAGCCCTTGGAGCGAGGGGTCAAAGAGCGTCTGGCACTGCTTTCTGAGTGCCTGGAGGTGAGCCTGGGTCTGGAGAAGGGCAAGCCCAAACCCAGCGTGCATAAGATCCTGCAGGGTCTGGAGGAGAAAAGGCCTAAGTGGAGCTCCATGCAGCTGCAGAAAGCACACAAGCTCTGCAGTGAGAGCATATTTGAGCATGTGGAGAGTGGCCTGGTGCAGGATAGAGGTGGACCCAGTGAACTGGCCAAGCAGAAAATGTGTGCTGTGCTGCTGGCGCTGTGCCAGGGAGCAGGTGGTATTCAGAACCTGCGGCAGATCCATCACACCATCCAGCTCAATGAGGGCTTGTTAAGGTCTAAGCTAGCTTCTGCTGTAGACAGTACATCTTCTCCCGAGGGACAACCGTCTGTCCTGTTCTCCTCAGCAGCGAATGCACTAAACAGTCCGCCCCACTTCAACCCGCTCTTTCACTTTGACCACATCGGCCATGCTAAATTTGATCAGTCAGCTTTGAGCAAGAGAGAGTGGGACTGGGCCCAACTGCTGTCGGCCTATCAGAGAGTGAGTCAGGTGACCTTCACAGATCTGCTGGCTAACAGgtggGAGATGCAGGACGGGGCTCCACTTGAAGATGAAGAGAAGATTTTAGTGGATCACTTaaagaaaacatatttaaacagaGCTCCAGAATCTGGTTCAGAAGTCTCTGAATGACCTGAATGCTATACATTTGAATTTTAAGGCGCTATATTTGacttgttaaaatattttattataaagtataattttatactgttttgttatcatttttgttgtttagtATGGGTATTAGGATAGACAATAATCAGGCATCACTGTAAATAGAAGAAGTAGTTTAAAGAACTGCTGTTGAACTGAATCACAGGTCCTGaccacacacatagacacacacacacacacaccaaagtgTCAGTATGCTGGTTACATTAGGTTTACCATTTCTGCTTGTTAGTAATTTTTGGTATTGGTATTTCTGTTTAAGCATATGTGCATTTATACTAATAAAAGTTATATCAAATA

Function

GO: NA

KEGG:

id description
K24554 KIAA0825; protein KIAA0825

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU415818 lncRNA downstream 18116 7087714 ~ 7088036 (-) True G350906
XR_004577103.1 lncRNA downstream 191809 6902293 ~ 6914343 (-) False LOC113537000
XR_004577105.1 lncRNA downstream 194346 6902293 ~ 6911806 (-) False LOC113537000
TU415793 lncRNA downstream 194578 6903149 ~ 6911574 (-) False LOC113537000
XR_004577104.1 lncRNA downstream 194587 6902293 ~ 6911565 (-) False LOC113537000
TU416207 lncRNA upstream 240718 7466596 ~ 7466953 (-) True G351266
TU416253 lncRNA upstream 312160 7538038 ~ 7538341 (-) True G351308
TU416324 lncRNA upstream 322708 7548586 ~ 7642268 (-) False G351362
TU416344 lncRNA upstream 359819 7585697 ~ 7590216 (-) False ccdc180
TU416355 lncRNA upstream 409224 7635102 ~ 7636193 (-) True G351384
XM_026931208.2 mRNA downstream 1293 6937285 ~ 7104859 (-) True fam172a
XM_034299045.1 mRNA downstream 552268 6537239 ~ 6553884 (-) False LOC113537041
XM_034299043.1 mRNA downstream 552268 6537239 ~ 6553884 (-) False LOC113537041
XM_034299044.1 mRNA downstream 552268 6537308 ~ 6553884 (-) True LOC113537041
XM_034299048.1 mRNA downstream 568867 6534776 ~ 6537285 (-) True LOC113537042
XM_034299069.1 mRNA upstream 42288 7268166 ~ 7374405 (-) False mctp1a
XM_026931250.2 mRNA upstream 42288 7268166 ~ 7374405 (-) True mctp1a
XM_034299071.1 mRNA upstream 42294 7268172 ~ 7374404 (-) False mctp1a
XM_034299070.1 mRNA upstream 42294 7268172 ~ 7374404 (-) False mctp1a
XM_034299372.1 mRNA upstream 185029 7410907 ~ 7412377 (-) True zgc:194908
TU415778 other downstream 331003 6764914 ~ 6775149 (-) True G350867
TU415368 other downstream 753780 6346895 ~ 6352372 (-) False LOC113542569
XR_004577154.1 other downstream 985193 6056981 ~ 6120959 (-) True pappab
XR_004577155.1 other downstream 985193 6057235 ~ 6120959 (-) False pappab
XR_004577106.1 other downstream 1527171 5576620 ~ 5578981 (-) False LOC117595919
XR_003403722.2 other upstream 377381 7603259 ~ 7607466 (-) False card9
TU417110 other upstream 1355022 8580900 ~ 8585926 (-) False malt1
XR_004577119.1 other upstream 1814928 9040806 ~ 9049408 (-) False LOC113536894
XR_003403715.2 other upstream 3147551 10373429 ~ 10411686 (-) False iqgap2
TU418361 other upstream 3283205 10509083 ~ 10517205 (-) False LOC113536921

Expression Profile