RNA id: TCONS_00008832


Basic Information

Item Value
RNA id TCONS_00008832
length 504
lncRNA type antisense_over
GC content 0.55
exon number 3
gene id XLOC_004229
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 33676834 ~ 33688949 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCGCCCATATTGGCCACCGTagagGTGCCACCCCTTTAATTCTGCAAGGGCTCCAAGGCCCCGCCCACAAACTGTAGCTGTATTCCTGTTGGTCAGAAGGACAGAGGGCGGGGTGGCCTTGCTCATGTCTACAGGGGCGTGTCTGAGTCAAACTGGGGCAGTCCATGCCTCCATACAGGGGTGTGGCCAGGACATCCCGTGTGCGCTGTTGAAGAGCCGACCCACATGTACGGCTACAAGTGGACCAGTGGGTGAAAGCGGAGACGACACAATCCATCGGACAAGGGCGATCGGATGGAAAGCAGTTGGACTGATGTGTGCTCCAGCCTTCAGCATGGACACACCACACTGAGCGAGTCTGGAGGCCGAGCGAACCACAGTCACTGGCCACACACACACCCCATACACctgaggaaaacacacacagagacagagagagatgtGAGGAGATGTGTTAAACTGCACTGAATATTTGAGGCAAAATTAAAAGTATTCGCCCTCCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008481 lncRNA downstream 275358 33344982 ~ 33401476 (-) False XLOC_004227
TCONS_00008830 lncRNA downstream 275446 33305132 ~ 33401388 (-) False XLOC_004227
TCONS_00008829 lncRNA downstream 294001 33305132 ~ 33382833 (-) False XLOC_004227
TCONS_00008482 lncRNA upstream 303084 33992033 ~ 33993147 (-) True XLOC_004235
TCONS_00008099 lncRNA upstream 531401 34220350 ~ 34225557 (-) False XLOC_004242
TCONS_00008100 lncRNA upstream 533944 34222893 ~ 34225798 (-) True XLOC_004242
TCONS_00008101 lncRNA upstream 560507 34249456 ~ 34255220 (-) True XLOC_004243
TCONS_00008833 lncRNA upstream 626576 34315525 ~ 34358689 (-) True XLOC_004244
TCONS_00008080 mRNA downstream 58222 33598614 ~ 33618612 (-) True XLOC_004228
TCONS_00008079 mRNA downstream 64401 33598213 ~ 33612433 (-) False XLOC_004228
TCONS_00008074 mRNA downstream 952983 32576300 ~ 32723851 (-) True XLOC_004220
TCONS_00008072 mRNA downstream 1804206 31869020 ~ 31872628 (-) True XLOC_004215
TCONS_00008071 mRNA downstream 2400770 31272649 ~ 31276064 (-) True XLOC_004214
TCONS_00008081 mRNA upstream 157491 33846440 ~ 33857911 (-) True XLOC_004230
TCONS_00008082 mRNA upstream 172228 33861177 ~ 33868886 (-) False XLOC_004231
TCONS_00008083 mRNA upstream 175319 33864268 ~ 33868881 (-) False XLOC_004231
TCONS_00008084 mRNA upstream 175553 33864502 ~ 33868908 (-) True XLOC_004231
TCONS_00008085 mRNA upstream 181408 33870357 ~ 33919309 (-) False XLOC_004232
TCONS_00008078 other downstream 305467 33371251 ~ 33371367 (-) True XLOC_004227
TCONS_00008075 other downstream 939241 32731165 ~ 32737593 (-) True XLOC_004221
TCONS_00008067 other downstream 2504580 31170349 ~ 31172254 (-) True XLOC_004210
TCONS_00008056 other downstream 3168043 30424226 ~ 30508791 (-) True XLOC_004205
TCONS_00008052 other downstream 3312010 30358109 ~ 30364824 (-) False XLOC_004204
TCONS_00008088 other upstream 277209 33966158 ~ 33966272 (-) True XLOC_004234
TCONS_00008102 other upstream 666595 34355544 ~ 34355662 (-) True XLOC_004245
TCONS_00008105 other upstream 777446 34466395 ~ 34466513 (-) True XLOC_004247
TCONS_00008119 other upstream 1536073 35225022 ~ 35225139 (-) True XLOC_004254
TCONS_00008174 other upstream 3610422 37299371 ~ 37299485 (-) True XLOC_004279

Expression Profile

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