RNA id: XM_026931424.2


Basic Information

Item Value
RNA id XM_026931424.2
length 5578
RNA type mRNA
GC content 0.53
exon number 61
gene id col27a1b
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 8682132 ~ 8747709 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCAAAAAAGAATGAAGTAACCGCAATGGAGCCGGATAATGCCCCGCACTCCAAACTCAGACAGGCTGGAGTCGGGGGgaGAATCTTATTTCTCTGCACGGTCCTCTACTGTACTTGCTATCTAGGGTTGGCCCAGGTACAGTCTGAAgatgtggaTATCCTCCAAAAGCTGGGCCTGGTGGGAAAACGACCTTCATCAGGGACACGATCCACTCTGTCAGGCGTCATTCCCTTCAAGTCAGGAGTTATCCTCACCCAGCGGGTGCGAATCGAAGTGCCTGTGAACTCCGTGGTGCCAGTCCCGTTGAGCACGGAGTTCTCCCTGATCTTCAGCATCTGCTCACATCGCATCAATAATGCTTTCCTCTTCACCATTGTGTCAAAGAGGAAGAGACTACAGCTAGGGGTGCAGTTCATCCCTGGGAAAATTGTAGTCTATGTTGGCCAAAAGAACTCTGTATATTTTGATTATGACATTCATAATGGCCAGTGGCACAACCTGGCTTTGGGCATCCAACCCCAAAGGGTCACTTTATATACTTCTTGTGGGAAGACAAGTGTACATgcaaatttgcattttaaaaatgaggaaACTCTGGATCCAGAAGGCTCCTTTCTTTTAGGCAAAATGAGCCAGAACTCAGTGCAGTTCGAAGGAGCAATCTGCCAGTTTGACATACATCCTTCTGCCAAGGCAGCTCACAACTATTGTaagtacattaaaaaacaatgcAGGGAAGCTGACACCTATCGAGCGAACCTACCGCCACTTTTACCGCTGCTGCTCCTGGATCCCAATATCTCCGTCACTCTACGGACCCCGATGACCATAACTGAGCTAATCGACAAAGGTTTTACTCCCAGCCTGTCACAGGATAAAACAAGGATTAATGCTGAAATCTCAGGAGGACTTAATACGTCCATTCAAATGACATCCCAGTATGGttccttgtctctctctgtgcatggAACGGTGCCTCCAAGGTTGTCCAGACCAACTCTGCAGATTCCCACACAGGCCAAAACACCAACTGTCACCCCCCTCCTTAGGACCAGGGCATCCCCAACATTCCCCAAGCCCACCCAGCAGAGCAGTCCCAAAAAGGGAATAACTATAAAACCCCATAAATCTAAAGATAACGACATGCCTGTGACAGCAAAACCAACCAGAAAGAAGTTAGAAAGTGTTCAACCTTCAGCAGCGACCAAACCTACCAGTGTTTTGCCCAACTCAAAAAGGCAGCTGACTACTATAGCAGTGAAGAGATCTGTTCCAGAGGTGACCACCTTTCGGTACTCCAAGCCAAACTCTTTTGTACCTGTCACCCCTGCGGCCACAGATGGTCTTCAAACATTTGACCTGGAACCGACCCAGTTTTCCCTCCTGGTTGGACCACCTGGACTAAAAGGAGAGCCAGGACCACCGgGACCTCCAGGGGAACCTGGGAAGCCAGGATTACCAGGGAAAAGAGGGCCTCGGGGTCCTCCAGGTCCACATGGAAACCCAGGTCGCCCAGGGCCTAAAGGACTCAAGGGAAAAAAGGGGGACCCTGGACTCTCCCCTGGCAGAGTGCCAAATGGAGCAAAAGGGGACCCTGGGATAGTGGGACCACCCGGACCACATGGACAAGCAGGTCGAAAAgGACAAAAAGGTCATCCTGGTCCACCTGGCCATCCTGGAGAGCCTGGGGAGCAAGGGCCAGATGGAAACCCGGGTGCCAAAGGTTATCCTGGCAGGCAGgGATTGCCTGGGCCAATGGGAAATACAGGACCAAAAGGAGTTCGGGGCTTCATCGGAATCCCAGGGCTCTTTGGTCTCCCAGGACCTGATGGAGAAAGAggTATTCCTGGTGTTCGTGGGAAGAAGGGCAAGATGGGTAGGCCGGGCTTTACTGGGGATTTTGGCGAGCGAGGACCACCAGGGCCTGACGGAAATCCAGGAGAACTGGGTCCACCTGGTCCTAGTGGAGTACTTGGCCTTATTGGGGACATGGGACCTCTTGGAATCATGGGTCTTCCAGGGCCTGTTGGACCCAAGggGGTATCAGGGAATCCAGGAGAGCCAGGACTGAAAGGTGATAAGGGGGAAATTGGTTTGCCAGGAGAGCCTGGAGAGCCTGGATTCCAAGGTGACAAGGGTATTCAGGGTTTGCCGGGAATGCCAGGCATCCGAGGGAAGCCAGGGCCACAGgGGAAACCTGGAGATCATGGACCAGATGGTTTGCCTGGCCCTCCAGGCCCAGAGGGATTTCCAGGTGATATCGGACCACCAGGGGAGAATGGCCCAGAAGGTCCAAAGGGGAAGTCAGGAGCAAGGGGAATACCTGGTCCAAGAGGAGCAGCTGGACAAGAGGGTGATGAAGGACCAGTTGGACCAGCCGGGCCCCCAGGACTGGAGGGTAGGCCTGGGAGGAAGGGATTCTCAGGAAAACCAGGAGCAGATGGGCCCCAGGGCGAGCCTGGAATAACTGGAAATGTTGGGATGCTTGGTGACAGGGGACTTGAGGGATTTAAAGGGCCTCCTGGTGAGACTGGGCTTCCTGGAGAGAAGGGAGATCGGGGAGAGACTGGTCAGCCAGGGCCACCAGGAGAAAGTGGACCGATGGGACACACAGGAACACCAGGTGAGAGAGGACCACCTGGCCTACCAGGAATACCTGGCCCTCCTGGTTCTAGAGGTCTCAGTGGCAGTAGAGGACCCAAAGGCAGAAGGGGGCCAAGGGGGCCTGAAGGACCACCTGGGGAGAATGGGTCAGTGGGGCGCAAGGGTCTGGATGGTCCACCAGGGAAATTGGGTTTAACAGGCCAGAAGGGAAAAATTGGTGAACCAGGGGAAGCTGGACCACCAGGATACCCAGGTATCCAAGGACCCTCCGGAATACCAGGAGCAAAGGGAATTCCAGGAATGCCTGGACCTTCAGGGCCAACAGGAACAATAGGCCCTTTGGGAGAGATTGGCTTGATGGGCCCACCAGGAAAAGTCGGGGAAGTGGGCCTacctggagaacctggagagaAGGGAGCTGTCGGGCCTCCTGGGAACATCGGTGAACCTGGCTTGATTGGAATAAGAGGCGAGCATGGGCTCAGCGGAGAAGCCGGGCAGAGTGGCCCAGATGGAGCCAAGGGCGAAAAGGGTGACATGGGAGTAGAGGGCGAGcaaggagaaaaaggagaaatggGACTGAAAGGAAAGGAGGGGCCACCTGGAGAGCCTGGCCTAGTTGGCGTTAGGGGTCCTGAAGGCAAACCTGGCAAAATAGGTGAAAGGGGAAAACCAGGAGAGAAGGGTAGCAAAGGTCACGAGGGTCACCTTGGCGAGACTGGACCAGTTGGTGAGCGGGGTCCTGTGGGTTTCCCTGGGCCAAAGGGAAACAGAGGAACCATCGGATTTGTGGGTGCACCAGGAAGAATGGGCCTACAAGGAAATCCAGGCCTGCAGGGATATGAAGGTCACCAGGGAACTCAGGGTCCAATTGGACCCCCAGGACCAAAAGGTGCAAAGGGTGAACCAGGGGATGATGGGAAGATTGAAGGCCCTGCTGGTCCTCCAGGTGACATCGGCCCTGTTGGTCTAAGAGGAGTCAGAGGAGGACCTGGTGACCCTGGCTACCCAGGTCAGCAAGGTATAGATGGTGAAAGGGGCAAACTTGGAGCTCCTGGATTGCCTGGAAACCCTGGTCCAAGAGGCATTCCGGGACCCAAAGGATCCAAAGGCGATCGAGGCCCAAAAGGCAAAAAGGGTGCTCAAGGTGAAACTGGCAGCAGAGGGTCTTCTGGTCCTGTTGGTCCCCCTGGTCCCAGAGGGGTCGTCGGTCGAGAGGGACCTGAGGGAAGTCCTGGCATGGATGGAGCACCTGGAAAAGATGGGTCTAAAGGAATACCAGGGGAACAGGGAAGTGATGGAGAAGTGGGTTTACCTGGAAAGACGGGGCTACGTGGCCAAACAGGACAACCTGGCTTACAAGGGAGTCAAGGTTCCTTTGGACCAAAGGGTGAGAGAGGCCTACCAGGTGAGATTGGACCTATTGGCAAGCGTGGAATCCCTGGAACCATGGGGATGCAAGGGAAACAAGGCAACCATGGAGACAAAGGCCAACCTGGTGATCCTGGTGAGCGGGGATTGTCTGGAGCTATTGGAATCTTTGGACCTAAGGGTCCACCTGGTGATGTTGGTCCTGCTGGTATCCAGGGACCACGAGGACCCCAGGGTTTGATGggaTCGAGAGGTGCCATCGGACCAGTCGGGATCATTGGGCCCAGCGGTTATCCAGGACCCCAGGGGGACAAAGGAAGTCGAGGGGAGATGGGTGTACCAGGACCAAGGGGCCCTCAAGGTCCTCGTGGCCCACCAGGACCCCCAGGTCCCCCTgcttcttctctgtctcttAAGAACGAGGCACTTGGTGCTGCTTTTCAAGTCATATTTGATTCCTACTCTGCACTGAGGTCTGAGacatactcagacataGACCTCCCCATGCTAGACCAGGGAACCGAGATCTTTAAGACCCTTCACTACCTCAGTAACCTGATCTACAGCATCAAGAACCCACTGGGAACGCAGGAGAACCCAGCCAGGATGTGCCGGGACCTGCTGGACTGTGAGCGCCGAGTGAACGATGGCACTTATTGGATTGACCCAAACCTGGGCTGCTCCTCTGACACAATTGAAGTCACCTGCAATTTCACAGGCGGAGGTCAAACCTGCCTGAGACCGCTCACTACATCCAAGTTGGAGATGGGTGTAGGAGTCATCCAGATGAACTTCATTCACCTGCTGAGCTCAGAGGCAGTGCAGCTTCTCACCATCCACTGCCTGAACATGTCTGTGTGGGCAGAAGGGGCATCCAGACCTCCATCCCACAATGCTGTGAGCTTCAAGGCCTGGAATGGAGAGATAATCGAGGCTAGAGGACTCATTCAGCCTGAACTGCTAAAGGACGAATGCTGGATGAAGGACGGTCGGTGGCATCAGACCCAGTTCCTTTTCCAGACACAGGAGCCCAACCTGTTGCCTATAGTCGATGTGCTGAACCTCCCAAACAAAAAACCAGGCTTCAATTATCACCTGGAGGTGGGACCTGTCTGCTTCATATAGAGCACAGAAGGAAAGAACAGAGAGGAGTAGGACTACAGCTTTGTGCTCTGAGATTTTTGGGCTCTCCCTGCTCAGATCTGGACTGCTGACTCAGCATGGAGGAAAATGAGATCCAGAGCATCTTGAAAGTAAACAAGACTTCTCAAGCTGGAGgctaaaatggacaaaaagctCATTTCTTTAAAGGACTACTTTCTCTCTTCAGCTGATTTTAAAAGAAGACTTTAAGAAACTTTGAGCAATCCGTCTCAAGCTGCCAAAAGAGTTAATTTATTCACACATTTGTGCTTTACGCACAAGATTTCCTGTTACAGATGGGTGCCGAATTGGAAGTTCAACACGTATTTGCATTTACAGTACTTATTttgtatctattttttttttttacacatgaacatatgtatttatatgtgtatgtatatttttttgtaaagtgcAATGTGAGAGAGATTTTGTTGTATAAAGGTGAATCCTATA

Function

GO:

id name namespace
GO:0001501 skeletal system development biological_process
GO:0048570 notochord morphogenesis biological_process
GO:0030282 bone mineralization biological_process
GO:0005581 collagen trimer cellular_component
GO:0046872 metal ion binding molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
K19721 COL5AS; collagen type V/XI/XXIV/XXVII, alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU417115 lncRNA downstream 40651 8640942 ~ 8641481 (-) False sh2d3cb
TU417139 lncRNA downstream 53040 8628413 ~ 8629092 (-) True G352036
TU417138 lncRNA downstream 53811 8627430 ~ 8628321 (-) True G352035
TU416987 lncRNA downstream 127914 8553721 ~ 8554218 (-) False hint2
TU417101 lncRNA downstream 130010 8551921 ~ 8552122 (-) True G352011
XR_003403714.2 lncRNA upstream 223923 8971632 ~ 8976888 (-) True LOC113536901
TU417671 lncRNA upstream 434439 9182148 ~ 9184754 (-) True G352491
TU417681 lncRNA upstream 449074 9196783 ~ 9200688 (-) True G352498
TU417667 lncRNA upstream 458719 9206428 ~ 9210530 (-) True G352487
TU417696 lncRNA upstream 585057 9332766 ~ 9332971 (-) True G352512
XM_026931394.2 mRNA downstream 27520 8641461 ~ 8654612 (-) True sh2d3cb
XM_026931393.2 mRNA downstream 30394 8641461 ~ 8651738 (-) False sh2d3cb
XM_026931396.2 mRNA downstream 30527 8641461 ~ 8651605 (-) False sh2d3cb
XM_026931003.2 mRNA downstream 41387 8634520 ~ 8640745 (-) True tor2a
XM_026931473.2 mRNA downstream 69512 8604203 ~ 8612620 (-) False LOC113537140
XM_026930995.2 mRNA upstream 16507 8764216 ~ 8773109 (-) True LOC113536867
XM_034298980.1 mRNA upstream 154473 8902182 ~ 8907720 (-) False LOC113536953
XM_026931141.2 mRNA upstream 154473 8902182 ~ 8907720 (-) True LOC113536953
XM_034298979.1 mRNA upstream 160087 8907796 ~ 8934237 (-) True camsap1b
XM_034298947.1 mRNA upstream 191542 8939251 ~ 8978655 (-) True notch1b
TU417110 other downstream 96206 8580900 ~ 8585926 (-) False malt1
XR_003403722.2 other downstream 1074666 7603259 ~ 7607466 (-) False card9
TU415778 other downstream 1906983 6764914 ~ 6775149 (-) True G350867
TU415368 other downstream 2329760 6346895 ~ 6352372 (-) False LOC113542569
XR_004577155.1 other downstream 2561173 6057235 ~ 6120959 (-) False pappab
XR_004577119.1 other upstream 293097 9040806 ~ 9049408 (-) False LOC113536894
XR_003403715.2 other upstream 1625720 10373429 ~ 10411686 (-) False iqgap2
TU418361 other upstream 1761374 10509083 ~ 10517205 (-) False LOC113536921
XR_004577163.1 other upstream 1987381 10735090 ~ 10748838 (-) False LOC113536823
TU420171 other upstream 4974396 13722105 ~ 13724835 (-) True mrpl41

Expression Profile