RNA id: XM_026931475.2


Basic Information

Item Value
RNA id XM_026931475.2
length 2655
RNA type mRNA
GC content 0.47
exon number 18
gene id LOC113537140
representative False

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 8603201 ~ 8612620 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aggcAGCTTTAGCTCACATTAGTGCCAAAAGTGTGACATTCAGCAGAAATTTGGTGACAAACAAAAGCCATGCTAGCTAACTGTAGAGCGACAGAATGGTTATTAGTGCCCTATAAAGCTTCAGAATAAAGTTAGGCAGCGAGTTAGCTAGTAAAACTTAGTTTTCTGATACACTACATGTCTAGTTAAATATCTGATATCAGCAGCCTGCTAGTCACGTGAACCAGCTGGCTGTCTGGCCAGCCTGATCATGCCTGTGGATCAGAAGCATTCAGGGATCTGACTGACCCAACACCAAGATTACAACTGAGCTCAAAATGCAGGAAAGCttgagaagACCTTTATCAAGAGATCGACAGAGCCAGTCCTCTACTGAGAACTGGTTTGAGAGAAGACAGCGGTCATCAGTAACAGACAGTCGGGGTTGCGACGGACCAAAGGGACGCGTTCCCAGTAGCTTCCAGCATCCAGGAGGGAGCAGGAGTCTCCGAAATGACACCGGCCAAAAGGGAGCCACATCAGAGCACACGGGAAAGCCATCAAGGCAAAGATCTGAGCCACAcaataaaagaagaataaacagaaaatcATCAGATACAGCCAGAGGAGgttataGAAGTGCCAGACCTGCTCAAAAATCAGAAGAGAGACCGTCAGAGGTTACGAAAAGTTGCACATTTGAAGTGAAACTGTCTGATTTTCCTGAGCTGAGTGACGCCAAGCCTCTCGCAAACCCAGATGCTCGACCGTGCTGGGGTTCAGTCAAATCATCAGCTCTTCATGATTCACCAGCAGCCATTGTTAAGGGGACTTCAGGAAATAAAGGACCAAAACAGAAACCAATTCAGCATGTCGCCTCAACAGAAAAGATTCAACAGAAATCGACTGCCATAGCAGGTGAAGATATTGAGCTTGTGTTACCAAACCCTTATGGATCACCAGCAACATCCTGGGCCAGCATTGCCTCTCAGCCTCCTAAAGTCAGGCAGAAGAGTCCTGCTGCACGAGATGCATCCTCTCAGGAGGATGTGTGTCAGCCAGAAGCTGAACAAACTgttaagaagaaaagaaagaaaaagaagaaatctaAACCAGTGTGTGAGGATGTAGAGCAGGAGACACACAATGTGCTACTCATACAGCAGGAGCCTCCCAAGTTTGAGgATGAAGAGGAGTTCCCAGATCTCTCTTTTGCTTCTGTCAATCCTAACAAAGGACAGAGGCATTTCTCAAATCCCGGAATACAGGAGAATACTGGGATACCTGAGAAAGATGGGTCAGTTCAGCAATTGGAGAATATAAACAAAAGCAAAGCCGCTGATGTGAAGTCTGGGTCTGCTGCTTCAAAGAAAGTGCAGCCAGTAGGTCAGAAGAAGAGCAAGGCACTTGTTCAGCTTGATCTTGGGAACATGCTGGCAGTTCTGGAGCAGAAACAACAGTCTCAAAAGTCCAGACAAGATGTTAAACCACTAACCCTTTCAGTGGGAGGAGCCCTACCGGTTGTCCACAAGGACCCAACAGCTCAAAAGAAGCATTCATGGCAGCAAGAGAGGATAGCACACAACCCTTTGGATTCCACCTGCCCTTTAGTGAAAAAGGGAAAACAGCGAGAGGTTCCTAAAGCTAAAAAGCCTACGCCTCTTAAAAGAGTCATTttgaaggagagagaagaaaggaaacAGAATCGCTTGCTTGAAGAAAGAGATCCAACGCGAATGACTAGTGAAGTCAGTCAAGAGCCACAAGCCAGTGAGAATCTTTCTGAGAGCAGTTCAGCGCAGCAGTGTCATGAACCAACAAGTGACCAAAGTGGTGCTGAGGAGGCTGATCGAACAGGTTCACCTGAAGACCTGAAGACCCTTGCAGAAGAAAATGCACCGTCTAAAAACTGGAATTCAAATTCCAACCCCAATCATCCGAAAATCCATAGCAGGAAATTCAGAGaCTACTGCAGCCAGATGCTAAGTAAGGAcgtagatgagtgtgtgaccACTCTGCTGAAGGAGCTGGTGAGGTTCCAGGACCGGCTTTACCAGAAAGATCCCATGAAGGCCAGAATGAAGAGGCGGCTGGTCATGGGTCTCAGGGAGGTGCTGAAACACCTGAAGCTCAGGAAAGTCAAGTGTGTCATCATCTCTCCCAACTGTGAACGTGTGCAGTCCAAAGGTGGTCTCGATGAGGCTCTTCACACAATCATTGATACATGTCTGGAACAAGGTGTTCCCTTCGTCTTTGCCTTGTCAAGGAAGGCTTTGGGTCGCTGTGTGAACAAAGCTGTTCCCGTCAGTCTGGTGGGCATCTTCAACTATGATGGAGCGCAGGACCATTACCACAAAATGATAGAGCTCACATCACAGGCAAGGAAAGACTATGAAATGATGATCACCAACCTTGAGGTGAGTTCACAGGAGCAGCCAGGagaggagagtgagacacagCAGCATATGGAGCCACCATTAGACACCCTGGAGACAGAAGAACCAGAATACATTAAAGTTTGGAAGAAAATGCTGGAGAAAGACTACAACCACAAGTTCCTGCCTTTCGAGGAGCAGTTCGCTTCAGTGACCATCAGCACAGATTCAGACAACCATCTGAATGACGTTGGAGGAAGTTGATAATTCCCCCATTGAATAAAGATTTATTATATTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU416987 lncRNA downstream 49985 8553721 ~ 8554218 (-) False hint2
TU417101 lncRNA downstream 52081 8551921 ~ 8552122 (-) True G352011
TU417100 lncRNA downstream 52419 8551580 ~ 8551784 (-) True G352010
TU417099 lncRNA downstream 52744 8551231 ~ 8551459 (-) True G352009
TU417095 lncRNA downstream 65553 8538439 ~ 8538650 (-) True G352007
TU417138 lncRNA upstream 15765 8627430 ~ 8628321 (-) True G352035
TU417139 lncRNA upstream 16748 8628413 ~ 8629092 (-) True G352036
TU417115 lncRNA upstream 29277 8640942 ~ 8641481 (-) False sh2d3cb
TU417175 lncRNA upstream 119418 8731083 ~ 8733868 (-) True G352068
XR_003403714.2 lncRNA upstream 359967 8971632 ~ 8976888 (-) True LOC113536901
XM_026931504.2 mRNA downstream 18192 8570517 ~ 8586011 (-) True malt1
XM_026931505.2 mRNA downstream 18194 8570517 ~ 8586009 (-) False malt1
XM_026931135.2 mRNA downstream 36073 8561959 ~ 8568130 (-) True emb
XM_026931298.2 mRNA downstream 47527 8553647 ~ 8556676 (-) True hint2
XM_034299320.1 mRNA downstream 54234 8539235 ~ 8549969 (-) False LOC113537023
XM_026931003.2 mRNA upstream 22855 8634520 ~ 8640745 (-) True tor2a
XM_026931394.2 mRNA upstream 29796 8641461 ~ 8654612 (-) True sh2d3cb
XM_026931393.2 mRNA upstream 29796 8641461 ~ 8651738 (-) False sh2d3cb
XM_026931396.2 mRNA upstream 29796 8641461 ~ 8651605 (-) False sh2d3cb
XM_026931425.2 mRNA upstream 70467 8682132 ~ 8747709 (-) False col27a1b
TU417110 other downstream 18277 8580900 ~ 8585926 (-) False malt1
XR_003403722.2 other downstream 996737 7603259 ~ 7607466 (-) False card9
TU415778 other downstream 1829054 6764914 ~ 6775149 (-) True G350867
TU415368 other downstream 2251831 6346895 ~ 6352372 (-) False LOC113542569
XR_004577155.1 other downstream 2483244 6057235 ~ 6120959 (-) False pappab
XR_004577119.1 other upstream 429141 9040806 ~ 9049408 (-) False LOC113536894
XR_003403715.2 other upstream 1761764 10373429 ~ 10411686 (-) False iqgap2
TU418361 other upstream 1897418 10509083 ~ 10517205 (-) False LOC113536921
XR_004577163.1 other upstream 2123425 10735090 ~ 10748838 (-) False LOC113536823
TU420171 other upstream 5110440 13722105 ~ 13724835 (-) True mrpl41

Expression Profile