RNA id: TCONS_00008082


Basic Information

Item Value
RNA id TCONS_00008082
length 1737
RNA type mRNA
GC content 0.44
exon number 5
gene id XLOC_004231
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 33861177 ~ 33868908 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAATGTGATCGCGCGCTAACTGAGTGAGTTCAGCAGTTCTGAGGTAAACAGAGAAACTGCAATTTCGCTTTATTTAATTCGCTTCATACTCGACTTTGGTTCTATGGACTTGTTGGATATGTTAGACCAAACGGACTGTCGACATTTCAAGACTGAGTGAACATTTTGGTTCTCAGTGAAATCACTACCAAGTCTGTCTCTATGAATCTGCGTCGCTCCACAATCCTCAAAGGCCGACAGCAAGAGCCTAAAAATGTGAAAGGCTCTGAGAGCATCTCTGTGCTGTTGAGTGACACcgactccagccaatcagagagtATTGAAGAAATAATAGACCAAGTGTCTGTTATTCGTGAGATGAAGCGGCCAGTAAGAAAGTATAAAGCTGCTGCTTCAAGGCGAGCAGGTAAAAAGAGGCTTTCTGTTGTAGAATCACAGCAGGATACGGTTCAGAAGATCTCGCTGGCTGTTGGTGCTATGGCTGAGGACACTTTAGAGAAACTCAGGTTGATGTCAAACAAATGTGAGACCGAGTTGAGGCCTACAAGTCCTGTTCATTCACGAGAAGAACTTGTTGTATCGGATGATTCCAGTAGCGATCATACTGTAAATTCAGGCCCCAGCTCGCCCTCTCGGCCTGTTGATAATATAAGATGCAGAGAATGTGAGAGACTTTTCACCAAAGTCAGAAGATGGCCGAGCACTAATAAGAAAAGCAGAGATAAAAatcCAGCATCTTTATCTTGTGATATGTGGGTTCTACTTAAAAAGCGTCATCCTCAGAGACGGCGTCATCGAGAGAAGGGGTTATTGTGGACCAGCTTAAGTCACATTAGGAAGATGTTAGCACAAGGCTCCGGTTTTTCAGCTGTCAGAACTCAGATGAAGTGCTCCAGACCTCATGTGTTTCTGCAGAGGATTTTGCGTCGCTGCAAGTATCTGACCTCCATTCAGTCCGACCTGTCCATTACCAGAGCAAAGCCACGACATCGGAAGAGGCCGCGAGTGGTTTTTCCACCCATTGCCGGCTGGAACTCCTCTGTAAAAAGAAGGCCTTCAGTGAACAACACCTTTCTCCAGCAGCTCTCTCCATTCAACCTCAGTGTCAGAGAAACACAGGAGGATGAACTCTATGCAGAAGAAAAGCTTTTAAAATCAAACCAAAAGAACTCCAGCAATCAGAAGAGCGCTAATGCCAAGGGCAAAATGAAGGAGCTGGAAGTGTCTGATGGTGTAGACGTAACACGCCGGGTGCTGAAGTTTGATGAACAATTGCAAACCGGGGAGCAGAGGAAAAGCCCACGGCAGCAGCATGAGCATGGAGAGATTCATGAAGCCCAGATTGAGCTGCAGGAAGAGTCGTCTGAGGATTCCGATTGGTTCAGGACGCCCACAGATCTGTTCAGTGTGAAACCCAAGATTAAACAGGGGAATCAAAAGAAAATCTCTGACCCAAAACCTAATGTGCAGAAACCGAACTTCATGTCCTTGTTGGCAACAATGTTGAAGAATCAGAACCAGATTATAAGGGAGTCCTGCAAATGAGTCTGCAGAGAAGCTTTGTAAGTAGTTTTGTTAGTTATTTTGTGATTGAAGAAACGTGCATCGCTGCTGCcgagtttttgttcattttataaaTGGATAGATCTGTAAGTTCTGATATTTATTGTGTTGTTCTTTTATTTGTACTCGAACATCGGCTCTTTGCTTGAGTAAATAAATCCTGCATTAACACA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-141222-2 No description available

Ensembl:

ensembl_id ENSDART00000172633

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008832 lncRNA downstream 172228 33676834 ~ 33688949 (-) True XLOC_004229
TCONS_00008831 lncRNA downstream 175266 33676834 ~ 33685911 (-) False XLOC_004229
TCONS_00008481 lncRNA downstream 459701 33344982 ~ 33401476 (-) False XLOC_004227
TCONS_00008480 lncRNA downstream 516720 33339539 ~ 33344457 (-) False XLOC_004227
TCONS_00008479 lncRNA downstream 520999 33337120 ~ 33340178 (-) False XLOC_004227
TCONS_00008482 lncRNA upstream 123147 33992033 ~ 33993147 (-) True XLOC_004235
TCONS_00008099 lncRNA upstream 351464 34220350 ~ 34225557 (-) False XLOC_004242
TCONS_00008100 lncRNA upstream 354007 34222893 ~ 34225798 (-) True XLOC_004242
TCONS_00008101 lncRNA upstream 380570 34249456 ~ 34255220 (-) True XLOC_004243
TCONS_00008833 lncRNA upstream 446639 34315525 ~ 34358689 (-) True XLOC_004244
TCONS_00008081 mRNA downstream 3266 33846440 ~ 33857911 (-) True XLOC_004230
TCONS_00008080 mRNA downstream 242565 33598614 ~ 33618612 (-) True XLOC_004228
TCONS_00008079 mRNA downstream 248744 33598213 ~ 33612433 (-) False XLOC_004228
TCONS_00008074 mRNA downstream 1137326 32576300 ~ 32723851 (-) True XLOC_004220
TCONS_00008072 mRNA downstream 1988549 31869020 ~ 31872628 (-) True XLOC_004215
TCONS_00008085 mRNA upstream 1471 33870357 ~ 33919309 (-) False XLOC_004232
TCONS_00008086 mRNA upstream 4735 33873621 ~ 33919014 (-) True XLOC_004232
TCONS_00008087 mRNA upstream 52472 33921358 ~ 33960318 (-) True XLOC_004233
TCONS_00008089 mRNA upstream 127640 33996526 ~ 34065718 (-) True XLOC_004236
TCONS_00008090 mRNA upstream 215646 34084532 ~ 34097418 (-) False XLOC_004237
TCONS_00008078 other downstream 489810 33371251 ~ 33371367 (-) True XLOC_004227
TCONS_00008075 other downstream 1123584 32731165 ~ 32737593 (-) True XLOC_004221
TCONS_00008067 other downstream 2688923 31170349 ~ 31172254 (-) True XLOC_004210
TCONS_00008056 other downstream 3352386 30424226 ~ 30508791 (-) True XLOC_004205
TCONS_00008052 other downstream 3496353 30358109 ~ 30364824 (-) False XLOC_004204
TCONS_00008088 other upstream 97272 33966158 ~ 33966272 (-) True XLOC_004234
TCONS_00008102 other upstream 486658 34355544 ~ 34355662 (-) True XLOC_004245
TCONS_00008105 other upstream 597509 34466395 ~ 34466513 (-) True XLOC_004247
TCONS_00008119 other upstream 1356136 35225022 ~ 35225139 (-) True XLOC_004254
TCONS_00008174 other upstream 3430485 37299371 ~ 37299485 (-) True XLOC_004279

Expression Profile

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