RNA id: XM_026939548.2


Basic Information

Item Value
RNA id XM_026939548.2
length 2250
RNA type mRNA
GC content 0.44
exon number 3
gene id sfrp1a
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 2700997 ~ 2712386 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTCGCACTTCCACTCATTTTTCAAGCGCAGGGGTCCCTGGCAGGCGGCCTTGTGAGTCAGCAGGAGGAaagcgcacacactcactctctttctctctctccctctctcagctGAATGCTGTCAAGCTTTCAGAGGCAGCCTTCTGAGCTCATTTAAAccacacattttcatttctactGGGGAAAATTTCCTGAGCCGTTTTGGCTTTTTCTGActttgagttttattttaagGGACCTGAAACAGGGccttttgtttttgcagtaaAGGCTCTGAACCTGCATCAGTGCCTTTGTTTTGGCAGAGACTGACATGATGAAGTCGGTGGCATCCTTGCGCCTGTGGAAGGCCACTACTGTGCTGGCACTGATGGTGAACCTGGTGCCCCTGAGCCTGGCAACGGAGTACGAGTACCTAGGCTGGAAGCCTGATTCGTTCGGTGGCGGGAGAGCCTATGACAAGCCTCCGCAGTGCGTGCCCATACCAGATGACCTGCGCCTGTGCCACGGTGTCGGCTACAACCAGATGCTGTTGCCCAACCTGCTTGAGCACGAGAGCATGGCCGAAGTGAGGCAGCAAGCGGGCAGCTGGGTGCCTCTGGTGCACAAGGCGTGCCATCCGGGCACACGCATCTTCCTGTGCTCGCTGTTCGCACCTGTCTGCATGGATCGGCCCATCTACCCATGCCGCTGGCTGTGCGAGAACGTGCGCCAGGGCTGTGAACCCATCATGGAGGCGTTCGGGTTCCCATGGCCTGAAATGCTCACCTGCACCAAGTTTCCTCAGGATGAAGTGTGCATCAGCACACCCAACACCACCGAAACATCCACAGAGAGTGGTTACCCGCCGGTCTGCCCACCATGCGACAACGAAATGAAAACCGATGCTATTCTGGAGCATATGTGTGCCAGCGAGTTCGCCATCAAGACCAAAATCAAGGAGGTGAAACGGGAGAATGCGGACCGCAAGGTGACcttgcagaagaagaagaaggctgTGAAATTGGGATccctaaaaaagaaagacttgAAGACCCTCACGTTGTATCTGAAGAACGGCGCCGACTGTCCCTGCTCGCAGCTGGACAACCTCAGCAGCACCTACCTCATTATGGGTCGCAAGACAGACAGGCAGTACCTCATCACCGGCATCCACAAGTGGGACAAATCCAACAAGGAGTTCAAAAAGACCTtgaagaaactgcaaagccacAAGTGCCCTACTTATGAAAAAGTCTTCAAATAATCCAGCAGCCAAAACAACATTTCCATCCTACTTTTGAATGAACTTGCACATATGAGCAACCCAAAAAAGCTCCCTTTGTTTATATACAGCCTATGTTATATATTTCTATGTATTTTTCAGACCAACACTTGTAGGTTTTTGTTTGTGCTGTTTAAGTTAGAGGACTCTCTTTAGGATTTTACGAATGGTACACTATCCAGCAAAGTACAAATCATTACTAATGTATATAGCCATATCAGTCCAGAATGTGTTGGAAAATTACCAGAATTCCTCTCGAATGTatcattatttcctttttttctctgtaaacGTCTAGCTTATTAAGACCACCCTTCTTTTTTGGATCATTCGGAAAGGTACTTATATTTTAAACTGTGAACCCTGCACACAAGATTTTGAGCCTTGAATGTTACCAAATATGTTGAACGTTATGTCTCACATTTTGGGCAGaatttctttgcttttattgttttttttttattgtacactCATTATCATACACTTTGTGAAGTAATCCACGCTAGACAACAACATAACCTGTATTCAGTAATCAATCCAAAGATAATCAAGCTGCTTTTGTATTCATTATGCTGTGATTGGTAGGTAATAGGTAATAGATGTCCTGGTTCACATTTTCATGCAAATGAgaccacacacattttaatacttAACCAAGGACAAAAAGCAAGCTTTGTAAACAACAACTATACATTATTATCTAAATTCCTTTTAGATCCACAAGATTCTggtcttgtttgttttgctatTATTTTGGGGCtaagttttgtgtatttttgaaatTGCAATTCATACAATTCCTACACTATATTACAAAATGCTTCTTGCATAGTGgtttaaaatgcacaatatacatatcaaatgactttttttattcagttagcACTATTAGTTTGAATTCATTTGTGTCTTTTGTAAAATGTTGCCAATCATTTTGTACATAAAATTCTAACACAAATATAGAATAAAACTGTGACACAAACACA

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005576 extracellular region cellular_component

KEGG:

id description
K02166 SFRP1; secreted frizzled-related protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412758 lncRNA downstream 106674 2549097 ~ 2594323 (-) True G348296
TU412773 lncRNA downstream 151987 2548123 ~ 2549010 (-) True G348311
TU412772 lncRNA downstream 152957 2546572 ~ 2548040 (-) True G348310
TU412771 lncRNA downstream 154482 2545415 ~ 2546515 (-) True G348309
TU412742 lncRNA downstream 276666 2423715 ~ 2424331 (-) True G348283
TU412967 lncRNA upstream 61336 2773722 ~ 2801204 (-) False LOC113542231
TU412963 lncRNA upstream 67451 2779837 ~ 2831679 (-) True LOC113542231
TU413141 lncRNA upstream 437615 3150001 ~ 3150416 (-) True G348640
TU413168 lncRNA upstream 486296 3198682 ~ 3198896 (-) True G348661
TU413170 lncRNA upstream 491705 3204091 ~ 3205284 (-) True G348663
XM_026939656.2 mRNA downstream 36515 2601534 ~ 2664482 (-) True zmat4a
XM_026940065.2 mRNA downstream 218814 2465572 ~ 2482183 (-) True LOC113542490
XM_026940243.2 mRNA downstream 242592 2435324 ~ 2458405 (-) True LOC113542614
XM_026940273.2 mRNA downstream 337842 2357271 ~ 2363155 (-) True ogfod2
XM_034299099.1 mRNA downstream 418004 2252981 ~ 2282993 (-) False tacr1a
XM_034299212.1 mRNA upstream 33761 2746147 ~ 2773403 (-) True loxl2b
XM_026939603.2 mRNA upstream 68601 2780987 ~ 2782082 (-) False LOC113542231
XM_026939605.1 mRNA upstream 72175 2784561 ~ 2785074 (-) True zgc:153409
XM_026939604.2 mRNA upstream 73053 2785439 ~ 2785937 (-) True LOC113542232
XM_026939601.2 mRNA upstream 73863 2786249 ~ 2791574 (-) False LOC113542230
TU412757 other downstream 36622 2637755 ~ 2664375 (-) False zmat4a
TU412645 other downstream 469430 2179543 ~ 2231567 (-) False LOC113542580
TU412644 other downstream 515053 2179543 ~ 2185944 (-) False LOC113542580
TU412577 other downstream 702527 1995902 ~ 1998470 (-) True G348145
TU412500 other downstream 872352 1827898 ~ 1828645 (-) True G348096
TU412979 other upstream 72291 2784677 ~ 2785896 (-) True G348491
XR_004577129.1 other upstream 102472 2814858 ~ 2964889 (-) False unc5db
XR_003404311.2 other upstream 443656 3156042 ~ 3166254 (-) False tm2d2
XR_004577114.1 other upstream 633769 3346155 ~ 3387730 (-) False trpm3
TU414275 other upstream 1826897 4539283 ~ 4539831 (-) True G349584

Expression Profile