RNA id: XM_026939605.1


Basic Information

Item Value
RNA id XM_026939605.1
length 514
RNA type mRNA
GC content 0.54
exon number 1
gene id zgc:153409
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 2784561 ~ 2785074 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACAGCGCGAACAGGAAAGGCAGAATACAGCAGGATGTCTGGGCGAGGAAAAGGCGGAAAGGGACTCGGGAAAGGCGGCGCCAAGCGGCATCGTAAAGTTTTGCGAGATAACATCCAGGGTATCACCAAACCCGCCATCAGGCGTCTGGCTCGCCGCGGCGGCGTGAAGCGTATTTCCGGTCTGATCTACGAGGAGACTCGCGGGGTGCTGAAGGTCTTTCTGGAGAACGTGATCCGCGATGCCGTGACTTACACCGAGCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTTTACGCGCTCAAGCGCCAGGGACGCACCCTGTACGGCTTCGGCGGCTGAACGCGCACTTCCGGACTTCACGctctgaacaaacaaaaactcctAAAGGCTCTTTTAAGGGCCGCCCAGTTATTCTCTCAGAGAGCAAACTCCAAACTCTGCCTGTTCACTTTCACTGGGATTGTTGTGagatttatttctgtacaaTAAACATGTTTCTTATTCTaa

Function

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K11254 H4; histone H4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412758 lncRNA downstream 190238 2549097 ~ 2594323 (-) True G348296
TU412773 lncRNA downstream 235551 2548123 ~ 2549010 (-) True G348311
TU412772 lncRNA downstream 236521 2546572 ~ 2548040 (-) True G348310
TU412771 lncRNA downstream 238046 2545415 ~ 2546515 (-) True G348309
TU412742 lncRNA downstream 360230 2423715 ~ 2424331 (-) True G348283
TU413141 lncRNA upstream 364927 3150001 ~ 3150416 (-) True G348640
TU413168 lncRNA upstream 413608 3198682 ~ 3198896 (-) True G348661
TU413170 lncRNA upstream 419017 3204091 ~ 3205284 (-) True G348663
TU413171 lncRNA upstream 419017 3204091 ~ 3205284 (-) False G348663
TU413169 lncRNA upstream 420431 3205505 ~ 3207834 (-) True G348662
XM_026939603.2 mRNA downstream 2479 2780987 ~ 2782082 (-) False LOC113542231
XM_034299212.1 mRNA downstream 11158 2746147 ~ 2773403 (-) True loxl2b
XM_026939548.2 mRNA downstream 72175 2700997 ~ 2712386 (-) True sfrp1a
XM_026939656.2 mRNA downstream 120079 2601534 ~ 2664482 (-) True zmat4a
XM_026940065.2 mRNA downstream 302378 2465572 ~ 2482183 (-) True LOC113542490
XM_026939604.2 mRNA upstream 365 2785439 ~ 2785937 (-) True LOC113542232
XM_026939601.2 mRNA upstream 1175 2786249 ~ 2791574 (-) False LOC113542230
XM_026939602.2 mRNA upstream 1175 2786249 ~ 2790896 (-) True LOC113542230
XM_026939600.2 mRNA upstream 8381 2793455 ~ 2801554 (-) False hdr
XM_026939599.2 mRNA upstream 8381 2793455 ~ 2801554 (-) True hdr
TU412757 other downstream 120186 2637755 ~ 2664375 (-) False zmat4a
TU412645 other downstream 552994 2179543 ~ 2231567 (-) False LOC113542580
TU412644 other downstream 598617 2179543 ~ 2185944 (-) False LOC113542580
TU412577 other downstream 786091 1995902 ~ 1998470 (-) True G348145
TU412500 other downstream 955916 1827898 ~ 1828645 (-) True G348096
XR_004577129.1 other upstream 29784 2814858 ~ 2964889 (-) False unc5db
XR_003404311.2 other upstream 370968 3156042 ~ 3166254 (-) False tm2d2
XR_004577114.1 other upstream 561081 3346155 ~ 3387730 (-) False trpm3
TU414275 other upstream 1754209 4539283 ~ 4539831 (-) True G349584
TU414706 other upstream 2536439 5321513 ~ 5364282 (-) True G349951

Expression Profile